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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALKDPEVCTDPFRLTTHAMGVNIYKEGQDVVLKPDSEYPEWLFEMNVGPPKKLEELDPETREYWRLLRKHNIWRHNRLSK
NRKF

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ydp:Bq 85 84 1.0000 0.9882 1.0000 1.03e-59 5aj4:Bq, 6gaw:Bq, 6gb2:Bq, 7nqh:Bq, 7nql:Bq, 7nsh:Bq, 7nsi:Bq, 7nsj:Bq, 8oin:Bc, 8oiq:Bc, 6ydw:Bq
2 8k2a:L4 83 83 0.8214 0.8313 0.8313 1.96e-49 8any:l, 6i9r:l, 8k2b:L4, 7l08:l, 7l20:l, 7o9k:l, 7o9m:l, 7odr:l, 7ods:l, 7odt:l, 7og4:l, 8oir:Bc, 8oit:Bc, 7po4:l, 7qi4:l, 7qi5:l, 7qi6:l, 6vlz:l, 6vmi:l, 8xt0:L4, 8xt1:L4, 8xt2:L4, 8xt3:L4, 6zm5:l, 6zm6:l, 6zs9:l, 6zsa:l, 6zsb:l, 6zsc:l, 6zsd:l, 6zse:l, 6zsg:l
3 8pk0:l 72 19 0.1786 0.2083 0.7895 5.43e-05
4 6ywe:i 124 27 0.1667 0.1129 0.5185 0.026 6yws:i, 6ywv:i, 6ywx:i, 6ywy:i
5 9f17:A 413 27 0.1429 0.0291 0.4444 2.2 9f17:B, 7pvo:A, 8qwa:A, 6zxq:A
6 7uch:A 636 60 0.2024 0.0267 0.2833 3.0 6b39:A, 6b3a:A, 6b3b:A
7 8jxj:A 570 25 0.1071 0.0158 0.3600 6.0 8jxj:B
8 8em7:A 4378 25 0.1071 0.0021 0.3600 6.5 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
9 8em4:A 3818 25 0.1071 0.0024 0.3600 7.1 8em4:B
10 5n4b:A 722 16 0.0714 0.0083 0.3750 7.4 5n4b:B, 5n4d:A, 5n4d:B
11 6z1p:AN 96 64 0.2143 0.1875 0.2812 7.5
12 3ahm:A 564 22 0.1190 0.0177 0.4545 9.2 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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