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BioLiP
>protein
ALFSCFRCGYMYEFAVSNSYCRKLTLRNDHCPRCDQLTLFRFMSVSGMVGNMPFKPIGVPGPSYATLWWRKTREGKEASA
PLDAVCKSDRW

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aoi:Bh 91 91 1.0000 1.0000 1.0000 4.39e-66 6hiv:Bh, 6hix:Bh, 6yxy:Bh
2 7aih:BG 85 74 0.5495 0.5882 0.6757 1.63e-34 7am2:BG, 7ane:BG
3 7zq9:9 186 47 0.1538 0.0753 0.2979 1.9 7bgi:9, 7d0j:9, 7dz7:9, 7dz8:9, 6ijo:9, 7zq9:92, 7zqd:9, 7zqd:92
4 8fhj:C 532 22 0.0989 0.0169 0.4091 2.3 8fhj:A, 8fhj:B
5 2qvh:A 311 45 0.1538 0.0450 0.3111 3.0 2qvh:B
6 2v9k:A 467 35 0.1319 0.0257 0.3429 3.2
7 6sl5:6 178 39 0.1319 0.0674 0.3077 4.7
8 6uio:B 110 47 0.1538 0.1273 0.2979 6.0
9 1f8v:A 355 39 0.1429 0.0366 0.3333 7.0 1f8v:B, 1f8v:C
10 4wsi:A 372 15 0.0879 0.0215 0.5333 7.4 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
11 1f76:A 336 28 0.1099 0.0298 0.3571 8.6 1f76:B, 1f76:D, 1f76:E, 7t5k:A, 7t5k:B, 7t5y:A, 7t5y:B, 7t6c:A, 7t6c:B, 7t6h:A, 7t6h:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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