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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALAQVRLLWGVCGSFSAVAVPHVNAWLRGTVGVQEIRTVMTAQARALMGPRMIEAVTGHAPVTDWEDHKGGGAAHVALGA
WADVLVILPATANFLAKAAHGIADDVLTATVLAAECPTVIAPVMNAAMWSKPAVQRNVDQLREDGYRIVEPKEGIPGSLG
DFQSAISTALIQAAA

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7cfu:F 175 175 1.0000 1.0000 1.0000 9.10e-126 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
2 6jls:A 162 171 0.3886 0.4198 0.3977 1.59e-29
3 5h75:D 225 152 0.3257 0.2533 0.3750 8.60e-26 5h75:A, 5h75:B, 5h75:C, 1p3y:1
4 6tgv:C 389 167 0.3714 0.1671 0.3892 1.36e-21 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
5 1qzu:A 160 147 0.2914 0.3187 0.3469 2.87e-19 1qzu:B, 1qzu:C, 1qzu:D
6 1e20:A 185 123 0.2343 0.2216 0.3333 2.05e-15 1mvl:A, 1mvn:A
7 3qjg:A 171 143 0.2057 0.2105 0.2517 1.68e-14 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
8 1g5q:A 174 169 0.2057 0.2069 0.2130 3.65e-13 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
9 6eoa:A 193 108 0.2114 0.1917 0.3426 3.76e-13
10 6jdd:A 176 133 0.1886 0.1875 0.2481 0.034
11 7lwb:A 182 62 0.0971 0.0934 0.2742 0.37 7bwt:B, 4lhv:A, 4lhv:B, 4lhv:C, 4lhv:D, 4lhw:A, 4lhw:B, 4lhw:C, 4lhw:D, 4lhw:E, 4lhy:A, 4lhy:B, 4lhz:A, 4lhz:B, 4li0:A, 4li0:B, 3qbt:A, 3qbt:C, 3qbt:E, 3qbt:G, 6rir:A, 6rir:B, 6sq2:A, 6sq2:B, 6stf:A, 6stf:B, 6stf:C, 6stf:D, 6stf:E, 6stg:A, 6stg:B, 5szi:A, 3tnf:A, 6whe:A, 6whe:B, 6yx5:A, 6zsi:A, 6zsi:B, 6zsj:A, 6zsj:B
12 3cg7:A 296 90 0.1200 0.0709 0.2333 1.4 3cg7:B, 3cm5:A, 3cm5:B, 3cm6:A, 3cm6:B, 5dk5:A, 5dk5:B
13 2pfy:A 301 49 0.1029 0.0598 0.3673 1.8 2pfy:B, 2pfy:C, 2pfy:D
14 3dz8:A 178 62 0.1029 0.1011 0.2903 2.9 8a4b:B, 8a4b:D, 8a4c:B, 8a4c:D
15 4rkf:B 172 62 0.1029 0.1047 0.2903 3.0 4rkf:A
16 6hxj:D 591 101 0.1543 0.0457 0.2673 4.7 6hxj:B, 6hxj:F, 6hxj:H, 6hxn:A, 6hxn:B, 6hxo:A, 6hxo:B, 6hxo:F, 6hxo:G, 6hxo:H, 6nzy:A, 6nzy:D, 6qcl:B, 6qcl:E, 6qcl:F, 6qcl:G, 6qcl:H
17 7cm7:A 620 57 0.1029 0.0290 0.3158 5.7 7cm6:A, 7cm6:B, 7cm6:C, 7cm6:D, 7cm6:E, 7cm6:F, 7cm6:G, 7cm6:H, 7cm7:B, 7cm7:C, 7cm7:D, 7cm7:E, 7cm7:F, 7cm7:G, 7cm7:H
18 2gf9:A 176 62 0.1029 0.1023 0.2903 6.1
19 3wis:A 180 24 0.0743 0.0722 0.5417 6.1
20 4caz:A 489 72 0.1371 0.0491 0.3333 7.6 4caz:B, 2wme:A, 2wme:B, 2wme:C, 2wme:D, 2wme:E, 2wme:F, 2wme:G, 2wme:H, 2wox:A, 2wox:B, 2wox:C, 2wox:D, 2xdr:A, 2xdr:B, 2xdr:C, 2xdr:D, 3zqa:A, 3zqa:B, 3zqa:C, 3zqa:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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