Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKR

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fkw:NK 69 67 1.0000 0.9710 1.0000 1.58e-40 8fkt:NK, 8fku:NK, 8fkv:NK, 8fkx:NK, 8fky:NK, 8fkz:NK, 8fl0:NK, 8fl2:NK, 8fl3:NK, 8fl4:NK, 8fl6:NK, 8fl7:NK, 8fl9:NK, 8fla:NK, 8flb:NK, 8flc:NK, 8fld:NK, 8fle:NK, 8flf:NK, 8idt:z, 8idy:z, 8ie3:z, 8ine:z, 8inf:z, 8ink:z, 8ipd:z, 8ipx:z, 8ipy:z, 8ir1:z, 8ir3:z, 6lss:z, 6lu8:z
2 4ymu:J 240 27 0.1791 0.0500 0.4444 2.3 4ymu:A, 4ymv:J, 4ymv:A
3 4pos:J 274 17 0.1343 0.0328 0.5294 5.1 4por:B, 4por:A, 4por:C, 4por:D, 4por:E, 4por:F, 4por:H, 4por:G, 4por:I, 4por:J, 4pos:B, 4pos:A, 4pos:C, 4pos:E, 4pos:D, 4pos:G, 4pos:F, 4pos:H, 4pos:I, 4pot:B, 4pot:A, 4pot:C, 4pot:D, 4pot:E, 4pot:G, 4pot:F, 4pot:H, 4pot:I, 4pot:J
4 7km3:F 190 31 0.1791 0.0632 0.3871 7.2 7km2:L, 7km2:D, 7km2:I, 7km2:A, 7km2:B, 7km2:K, 7km2:C, 7km2:E, 7km2:J, 7km2:F, 7km2:G, 7km2:H, 7km3:L, 7km3:D, 7km3:I, 7km3:A, 7km3:B, 7km3:G, 7km3:K, 7km3:C, 7km3:E, 7km3:H, 7km3:J
5 6or5:A 2058 25 0.1642 0.0053 0.4400 9.1
6 4pw7:E 198 42 0.1791 0.0606 0.2857 9.2 4pw5:A, 4pw5:B, 4pw5:E, 4pw5:F, 4pw6:A, 4pw6:B, 4pw7:A, 4pw7:B, 4pw7:F
7 6ha8:V 541 27 0.1642 0.0203 0.4074 9.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218