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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKPPSYSSVDSLRPARVSRMDADWATIYEQVRRQVMGNAYVMEGEAPDIDVAFSQLKGGNLTVREFVRAVGKSASYRTRF
MEAKSSYNFVLLNFKHFLGRAPTQEEVSTHIQILATSGLEAEIDSYIDSDEYKALFGDHVVPYVVYRGTYLSSERFNRMV
KANPGGATSDKAKSNLNMIATVAADLPTDAIDVMRGLPSPITSETLAFGTAY

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ezx:O3 375 212 1.0000 0.5653 1.0000 3.02e-157 7ezx:OO, 6kgx:b1, 6kgx:o1, 6kgx:b4, 6kgx:o4, 7liz:A, 7y4l:Y7, 7y4l:b7, 7y5e:YP, 7y5e:bP, 7y7a:YL, 7y7a:bL, 7y7a:bU, 7y7a:YU
2 5y6p:B2 374 141 0.3632 0.2059 0.5461 5.83e-49 5y6p:b3
3 5y6p:dy 303 153 0.3679 0.2574 0.5098 1.35e-46 5y6p:dz
4 5y6p:a8 362 189 0.3915 0.2293 0.4392 7.39e-46 5y6p:a9
5 7ezx:d4 297 160 0.3632 0.2593 0.4813 7.96e-42 7ezx:dD, 6kgx:d9, 6kgx:dJ, 7y4l:d5, 7y4l:dJ, 7y5e:dD, 7y5e:dQ, 7y7a:d2, 7y7a:dc, 7y7a:dF, 7y7a:dM
6 7y4l:z8 463 204 0.4104 0.1879 0.4265 2.40e-41 7ezx:zJ, 7ezx:zL, 6kgx:zE, 6kgx:zG, 7y4l:zF, 7y5e:zK, 7y5e:zF, 7y7a:zT, 7y7a:zQ, 7y7a:zb, 7y7a:z6
7 7ezx:MC 280 134 0.3019 0.2286 0.4776 3.43e-40 7ezx:ME, 7y4l:ZG, 7y4l:MG, 7y5e:ZI, 7y5e:MI, 7y7a:MJ, 7y7a:Mk, 7y7a:ZJ, 7y7a:Zk
8 7y4l:bH 407 147 0.3208 0.1671 0.4626 4.23e-40 7ezx:bB, 7ezx:bM, 6kgx:b8, 6kgx:bA, 7y4l:b4, 7y5e:bJ, 7y5e:bM, 7y7a:b3, 7y7a:bC, 7y7a:bV, 7y7a:bp
9 7ezx:e2 248 173 0.3396 0.2903 0.4162 5.23e-38 7ezx:eR, 6kgx:e3, 6kgx:eD, 7y4l:eK, 7y4l:e1, 7y5e:eA, 7y5e:e7, 7y7a:eD, 7y7a:e5, 7y7a:eg, 7y7a:ei
10 5y6p:ex 233 168 0.3066 0.2790 0.3869 9.79e-32 5y6p:ew, 5y6p:fz, 5y6p:fd
11 5y6p:24 331 156 0.2830 0.1813 0.3846 1.04e-26 5y6p:X5, 5y6p:S8, 5y6p:X9, 5y6p:aX, 5y6p:bX
12 7ezx:X1 324 207 0.3066 0.2006 0.3140 1.52e-24 7ezx:X7, 7ezx:X9, 7ezx:XF, 7ezx:XI, 7ezx:XK, 6kgx:X2, 6kgx:X6, 6kgx:X7, 6kgx:XB, 6kgx:XF, 6kgx:XI, 7y4l:XB, 7y4l:XC, 7y4l:XD, 7y4l:XE, 7y4l:X2, 7y4l:X6, 7y5e:XE, 7y5e:XG, 7y5e:XH, 7y5e:XO, 7y5e:X1, 7y5e:X4, 7y7a:X1, 7y7a:X4, 7y7a:X8, 7y7a:XI, 7y7a:XK, 7y7a:XP, 7y7a:XR, 7y7a:XS, 7y7a:Xe, 7y7a:Xj, 7y7a:Xl, 7y7a:Xn
13 8uhe:K 593 109 0.2075 0.0742 0.4037 8.38e-14
14 8uhe:K 593 92 0.1604 0.0573 0.3696 7.02e-12
15 8tpj:A 210 91 0.1604 0.1619 0.3736 1.24e-13
16 5y6p:aW 228 149 0.2028 0.1886 0.2886 8.64e-11 5y6p:14, 5y6p:W5, 5y6p:R8, 5y6p:W9, 5y6p:bW
17 5lq4:B 465 44 0.0660 0.0301 0.3182 0.47 5lq4:A, 8pz5:A, 8pz5:B
18 8p5d:LC0 327 109 0.1226 0.0795 0.2385 2.0 8p60:LC0, 8p60:KC0, 7qca:LC0
19 7v1q:A 251 41 0.0755 0.0637 0.3902 6.2 7v1q:B, 7v1q:C, 7v1q:D, 7v1q:E, 7v1q:F, 7v1q:G, 7v1q:H, 7v1r:A, 7v1r:B, 7v1r:C, 7v1r:D, 7v1r:E, 7v1r:F, 7v1r:G, 7v1r:H
20 8jze:a 670 34 0.0519 0.0164 0.3235 6.4 8jzf:a
21 5b7x:A 156 29 0.0519 0.0705 0.3793 7.9
22 8asd:A 1826 47 0.0802 0.0093 0.3617 8.8
23 8r2h:B 701 19 0.0377 0.0114 0.4211 9.1 8r2h:A
24 1ee0:A 376 32 0.0566 0.0319 0.3750 9.4 1ee0:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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