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BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGSRNVRSIEANIKFEILTETREMAEEIADRVAVKYFNDYAG
IIYICSAEVLYGH

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7cyf:D 109 101 1.0000 0.8532 0.9208 4.67e-60 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
2 7r30:B 102 93 0.9462 0.8627 0.9462 3.99e-57 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
3 6ntb:C 104 96 0.5699 0.5096 0.5521 3.00e-32 6mm2:A, 6ntb:A, 6ntb:B
4 6mmo:A 91 93 0.5161 0.5275 0.5161 8.06e-29 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
5 5d4n:B 90 91 0.2473 0.2556 0.2527 0.015 5drk:C
6 5d4o:A 106 95 0.2473 0.2170 0.2421 0.024 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
7 2ii6:A 393 36 0.1183 0.0280 0.3056 1.9 2c84:A, 2ex1:A, 2ihj:A, 2ihk:A, 2ihz:A, 2iib:A, 2iiq:A, 2iiq:B, 2ilv:A, 2iy7:A, 2iy8:A, 3s44:A, 8sv2:A
8 8pnj:A 390 50 0.1613 0.0385 0.3000 2.1
9 4v3b:A 388 38 0.1290 0.0309 0.3158 2.6 4v3c:A
10 2okj:B 504 55 0.1720 0.0317 0.2909 3.2 2okj:A, 3vp6:A, 3vp6:B
11 4a7z:A 881 18 0.1183 0.0125 0.6111 4.0 4a7k:A, 4a7y:A
12 6pl6:B 577 21 0.1075 0.0173 0.4762 4.3
13 6m0w:A 1032 59 0.1935 0.0174 0.3051 5.1 6m0v:A, 6m0x:A
14 6ucz:B 265 78 0.2366 0.0830 0.2821 7.0 6ucz:A
15 4b55:A 273 36 0.1505 0.0513 0.3889 8.0 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
16 5ux5:A 963 58 0.2258 0.0218 0.3621 8.4 5ux5:B, 5ux5:C, 5ux5:D
17 8cbc:A 455 44 0.1398 0.0286 0.2955 8.9 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417