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BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGSRNVRIEANIKFEILTETREMAEEIADRVAVKYFNDYAGI
IYICSAEVLYGH

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cyf:D 109 101 1.0000 0.8440 0.9109 3.34e-59 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
2 7r30:B 102 92 0.9565 0.8627 0.9565 3.11e-57 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
3 6ntb:C 104 96 0.5652 0.5000 0.5417 1.74e-31 6mm2:A, 6ntb:A, 6ntb:B
4 6mmo:A 91 92 0.5217 0.5275 0.5217 5.52e-29 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
5 5d4n:B 90 91 0.2500 0.2556 0.2527 0.015 5drk:C
6 5d4o:A 106 94 0.2500 0.2170 0.2447 0.017 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
7 7vw3:A 1052 62 0.2391 0.0209 0.3548 0.32 5axw:A, 5czz:A, 7el1:A, 7eni:A, 7enr:A, 8jft:A, 8jg9:A, 8jg9:D
8 6ucz:B 265 78 0.2500 0.0868 0.2949 0.69 6ucz:A
9 4b55:A 273 38 0.1630 0.0549 0.3947 1.1 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
10 3c4q:A 393 75 0.2174 0.0509 0.2667 1.4 3c4q:B, 3c4v:A, 3c4v:B
11 8cbc:A 455 48 0.1413 0.0286 0.2708 3.9 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
12 4a7z:A 881 18 0.1196 0.0125 0.6111 3.9 4a7k:A, 4a7y:A
13 5go9:A 3423 78 0.2065 0.0056 0.2436 4.7 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
14 6jgz:B 3485 78 0.2065 0.0055 0.2436 4.7 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
15 6jrs:A 3488 78 0.2065 0.0054 0.2436 4.7 6jrs:D, 6jrs:G, 6jrs:J
16 6jiy:A 3521 78 0.2065 0.0054 0.2436 4.7 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
17 4nae:A 219 57 0.1413 0.0594 0.2281 8.3 4nae:B
18 8gy9:A 249 26 0.1196 0.0442 0.4231 9.0 8gy9:B, 8gya:A, 8gya:B, 8gyb:A, 8gyb:B, 8gyb:C, 8gyb:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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