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BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGIEANIKFEILTETREMAEEIADRVAVKYFNDYAGIIYICS
AEVLYGHTFCGPEGCSAWS

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r30:B 102 102 1.0000 0.9706 0.9706 4.37e-67 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
2 7cyf:D 109 109 0.9596 0.8716 0.8716 4.24e-62 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
3 6mmo:A 91 85 0.4848 0.5275 0.5647 3.59e-29 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
4 6ntb:C 104 98 0.4848 0.4615 0.4898 1.98e-27 6mm2:A, 6ntb:A, 6ntb:B
5 5d4n:B 90 85 0.2020 0.2222 0.2353 0.092 5drk:C
6 3dls:A 285 33 0.1414 0.0491 0.4242 0.35 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
7 5d4o:A 106 93 0.2222 0.2075 0.2366 0.54 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
8 4a7z:A 881 19 0.1212 0.0136 0.6316 1.0 4a7k:A, 4a7y:A
9 1qtw:A 285 52 0.1616 0.0561 0.3077 2.1 4k1g:A, 4k1g:B, 2nq9:A, 2nqh:A, 2nqj:A, 2nqj:B, 1qum:A
10 6m0w:A 1032 56 0.1919 0.0184 0.3393 3.2 6m0v:A, 6m0x:A
11 4b55:A 273 38 0.1616 0.0586 0.4211 3.4 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
12 8d0b:F 915 36 0.1313 0.0142 0.3611 4.3 8d0k:F
13 7opl:A 1070 36 0.1313 0.0121 0.3611 4.3 6as7:A, 9c8v:C, 8d96:C, 8d9d:C, 5exr:C, 5exr:G, 5iud:A, 5iud:D, 5iud:G, 5iud:J, 7n2m:A, 4q5v:A, 4q5v:E, 4qcl:A, 8qj7:A, 7u5c:C, 8vy3:C, 4y97:B, 4y97:D, 4y97:F, 4y97:H
14 4cab:A 507 50 0.1313 0.0256 0.2600 5.7 4cab:B, 4cab:C, 4cab:D
15 5ux5:A 963 57 0.2121 0.0218 0.3684 5.9 5ux5:B, 5ux5:C, 5ux5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417