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BioLiP
>protein
AKLLIPQAASAIEQMKLEIASEFGVQLGAETTSRANGSVGGEITKRLVRLAQQNMG

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2z3x:A 56 56 1.0000 1.0000 1.0000 1.94e-34 2z3x:B, 2z3x:C
2 4m25:B 317 21 0.1607 0.0284 0.4286 2.8 4m25:C, 4m25:D, 4m26:B, 4m27:B, 4m2f:B, 4m2g:B, 4m2i:B, 4m2i:C, 4m2i:D, 4ne0:B, 4ne0:D
3 4ne0:A 337 21 0.1607 0.0267 0.4286 2.9 4m25:A, 4m26:A, 4m26:C, 4m26:D, 4m27:A, 4m27:C, 4m27:D, 4m2c:B, 4m2c:C, 4m2c:D, 4m2e:B, 4m2e:C, 4m2e:D, 4m2f:A, 4m2f:C, 4m2f:D, 4m2g:A, 4m2g:C, 4m2g:D, 4m2i:A, 4ne0:C
4 8h3x:C 357 37 0.2321 0.0364 0.3514 6.9 8h3y:A, 8h3y:B, 8h3y:C, 3p24:A, 3p24:B, 3p24:C, 3p24:D, 7pnd:A, 7pnd:B, 7pol:A, 7poo:A, 7poo:B, 7poq:A, 7poq:B, 7pou:A, 7pou:B, 8wem:C, 8wem:A, 8weo:B, 8weo:A
5 1z7e:D 644 59 0.2500 0.0217 0.2373 8.9 2bln:A, 2bln:B, 5j63:A, 5j63:B, 5j63:C, 5j63:D, 1z7e:A, 1z7e:B, 1z7e:C, 1z7e:E, 1z7e:F
6 8om2:G 203 20 0.1607 0.0443 0.4500 9.2 8d8k:G, 8d8l:G, 5mrc:GG, 5mre:GG, 5mrf:GG, 8om3:G, 8om4:G
7 4hdr:A 335 23 0.1786 0.0299 0.4348 9.3 4hdk:A, 4hdm:A, 4hdr:C, 4hds:A
8 3khj:A 302 36 0.2321 0.0430 0.3611 9.3 3khj:E, 3khj:F, 3khj:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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