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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AIGGPFSLIRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVHE
YVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQY

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n5u:A 161 161 1.0000 0.9752 0.9752 6.15e-114 6n5u:B, 6n5u:C
2 2gqk:A 173 162 0.4904 0.4451 0.4753 1.22e-55 2ggt:A, 2ggt:B, 2gql:A, 2gqm:A, 2gt6:A, 2hrf:A, 2hrn:A
3 2rli:A 170 160 0.4331 0.4000 0.4250 2.36e-48
4 2b7j:A 158 157 0.4459 0.4430 0.4459 8.41e-48 2b7j:C
5 4wbr:D 157 138 0.4013 0.4013 0.4565 4.91e-38
6 1xzo:A 172 140 0.2739 0.2500 0.3071 1.60e-09 1xzo:B
7 5hfu:B 897 71 0.1338 0.0234 0.2958 0.027 5hex:A, 5hex:B, 5hfu:A, 2nzt:A
8 2nzt:B 867 71 0.1338 0.0242 0.2958 0.028
9 5hg1:A 867 71 0.1338 0.0242 0.2958 0.030
10 1qha:A 903 50 0.1210 0.0210 0.3800 0.035 1bg3:A, 1bg3:B, 1cza:N, 1dgk:N, 4f9o:A, 4f9o:B, 4foe:A, 4foe:B, 4foi:A, 4foi:B, 4fpa:A, 4fpa:B, 4fpb:A, 4fpb:B, 1hkb:A, 1hkb:B, 1hkc:A, 1qha:B
11 5ume:E 292 54 0.1210 0.0651 0.3519 0.13 5ume:A, 5ume:B, 5ume:C, 5ume:D, 5ume:F
12 7xjp:A 580 73 0.1019 0.0276 0.2192 0.24
13 1h88:C 152 71 0.1274 0.1316 0.2817 0.35 1h89:C, 1h8a:C, 1mse:C, 1msf:C
14 4eo3:A 321 25 0.0828 0.0405 0.5200 0.55 4eo3:B
15 1y7o:B 178 52 0.1274 0.1124 0.3846 0.76 1y7o:A, 1y7o:C, 1y7o:E, 1y7o:F, 1y7o:G
16 3hm8:A 441 70 0.1083 0.0385 0.2429 0.78 3hm8:B, 3hm8:C, 3hm8:D
17 4nfu:A 619 96 0.1401 0.0355 0.2292 1.1 7xey:A
18 3zqc:J 119 54 0.0955 0.1261 0.2778 3.8 3zqc:A, 3zqc:D, 3zqc:G
19 3snp:A 850 43 0.1019 0.0188 0.3721 4.6 3sn2:A, 3snp:B
20 1b74:A 252 57 0.1210 0.0754 0.3333 4.8
21 4z38:B 439 83 0.1210 0.0433 0.2289 5.0 4z38:A
22 6pey:B 290 54 0.1019 0.0552 0.2963 5.2 1b5t:A, 1b5t:B, 1b5t:C, 2fmn:A, 2fmn:B, 2fmn:C, 2fmo:A, 2fmo:B, 2fmo:C, 3fst:A, 3fst:C, 3fst:E, 3fsu:A, 3fsu:C, 3fsu:E, 6pey:A, 6pey:C, 1zp3:A, 1zp3:B, 1zp3:C, 1zp4:A, 1zp4:B, 1zp4:C, 1zpt:A, 1zpt:B, 1zpt:C, 1zrq:A, 1zrq:B, 1zrq:C
23 7k5b:B 4524 50 0.0828 0.0029 0.2600 8.7 8bx8:B, 7k58:B, 7kek:B
24 5ksd:A 833 88 0.1338 0.0252 0.2386 8.8 5ksd:B
25 5hkk:K 478 40 0.0764 0.0251 0.3000 8.8 5hkk:A, 5hkk:B, 5hkk:C, 5hkk:I, 5hkk:J, 5ik2:A, 5ik2:B, 5ik2:C, 5ik2:I, 5ik2:J, 5ik2:K
26 3aoe:F 417 34 0.0701 0.0264 0.3235 9.2 3aoe:E, 3aoe:C, 3aoe:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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