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BioLiP
>protein
AIEFNIQESKILKGVYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYG
EIHQVVVDCRKDSPTYLKYEKFIINQDNQQIILVPAGFGNAHYVTSESAVYYYKCAYKGDYVQFTYAWNDERIGIDWPTN
SPILSERDILAT

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dcl:A 185 176 1.0000 0.9297 0.9773 3.95e-126 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
2 7m15:D 181 176 0.7965 0.7569 0.7784 7.02e-102 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
3 8dco:B 181 175 0.7733 0.7348 0.7600 1.92e-98 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
4 1dzt:A 183 162 0.3198 0.3005 0.3395 1.89e-27 1dzt:B
5 6c46:A 183 163 0.3198 0.3005 0.3374 2.65e-23 6c46:D
6 6ndr:A 188 159 0.3023 0.2766 0.3270 9.13e-23 6ndr:B
7 2ixh:A 184 158 0.2791 0.2609 0.3038 1.36e-22 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
8 3ryk:A 175 175 0.3314 0.3257 0.3257 1.45e-21 3ryk:B
9 1epz:A 183 166 0.3140 0.2951 0.3253 3.79e-19
10 7pvi:AAA 199 176 0.3081 0.2663 0.3011 4.02e-17 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
11 5buv:A 174 173 0.3140 0.3103 0.3121 2.15e-13 5buv:B
12 2ixc:A 198 167 0.2500 0.2172 0.2575 2.53e-13 2ixc:B, 2ixc:C, 2ixc:D
13 7pwh:AAA 203 163 0.2616 0.2217 0.2761 9.53e-12
14 1oi6:A 202 176 0.2849 0.2426 0.2784 6.45e-11 1oi6:B
15 4hn1:C 201 99 0.1802 0.1542 0.3131 7.03e-08 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
16 2ixl:C 197 131 0.2035 0.1777 0.2672 0.003 2ixl:A, 2ixl:B, 2ixl:D, 1nyw:A, 1nyw:B, 1nzc:A, 1nzc:B, 1nzc:C, 1nzc:D
17 2b0s:L 215 58 0.1047 0.0837 0.3103 0.91 2b1a:L, 2b1h:L
18 8hic:A 395 89 0.1512 0.0658 0.2921 1.7 7s6f:A
19 7s6e:B 400 89 0.1512 0.0650 0.2921 2.1 7s6e:A
20 4fem:A 214 87 0.1453 0.1168 0.2874 4.9 4fch:A
21 6fv5:B 382 73 0.1105 0.0497 0.2603 7.5 7b2i:A, 6fv5:A, 7ov9:A, 7ovo:A, 7ovs:A, 7owz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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