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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AHSAALEVLFQGPGQPGFCIKTNSSEGKVFINICHSPSIPPPADVTEFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFY
RRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSI

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4psi:A 125 125 1.0000 1.0000 1.0000 2.51e-93 4psi:B
2 4cv4:A 133 124 0.8080 0.7594 0.8145 4.45e-72 4ckt:A, 4ckt:B
3 4cse:B 112 111 0.7840 0.8750 0.8829 5.84e-71 4cse:A
4 7kri:A 127 13 0.1040 0.1024 1.0000 0.094 7kri:B, 7kri:C, 7n3k:A, 7n3k:B, 7n3k:C, 7n3k:D, 7n3k:E, 7n3k:F, 7n3k:G, 7n3k:H
5 5o9b:A 68 18 0.0880 0.1618 0.6111 0.81
6 5cfa:B 328 74 0.1520 0.0579 0.2568 3.1 5cf3:A, 5cfa:A
7 5okn:G 402 83 0.1840 0.0572 0.2771 3.6 6squ:A
8 5okn:D 433 83 0.1840 0.0531 0.2771 3.7 4a9c:B, 5okn:C, 5okn:E, 5okn:F, 5okn:H, 6squ:B
9 2i7a:A 157 29 0.1040 0.0828 0.4483 4.0
10 6yvb:C 324 12 0.0800 0.0309 0.8333 5.7 6ypo:A, 6ypo:B, 6ys6:B, 6ys6:C, 6ysp:A, 6ysp:B, 6ysp:C, 6yvb:A, 6yvb:B, 6yvb:D, 6yvb:E, 6yvb:F, 6yw9:A, 6yw9:B, 6yw9:C, 6ywj:A, 6ywj:B
11 8fnc:8 516 70 0.1280 0.0310 0.2286 5.8 8fnf:8, 8fni:8, 8fnk:8
12 8st8:A 195 19 0.0960 0.0615 0.6316 6.3
13 6fxr:A 700 43 0.1200 0.0214 0.3488 8.2 6fxk:A, 6fxm:A, 6fxt:A, 6fxx:A, 6fxy:A, 8one:A, 6te3:A, 6tec:A, 6tes:A, 6teu:A, 6tex:A, 6tez:A, 6wfv:A
14 2z2p:A 293 58 0.1200 0.0512 0.2586 8.5 2z2p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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