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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGPETIAKERASAETYNNNLESAPILDPWLESQRPDTPQYQAYLHEMDIDPVMARIVIPSIHVSLPIYHGTDSRTLTEGV
GHLFGTSLPVGGPSTHSVLTGHTGLSTATMFDNLNQLKKGDVFYVSSLGQTLKYEVNDITVVKPEETDSLRKVPGRDLVT
LITCTPYGVNSHRLLVTGERVPMDP

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2xwg:B 185 185 1.0000 1.0000 1.0000 7.04e-137 2xwg:A, 2xwg:C
2 4g1h:A 176 179 0.4595 0.4830 0.4749 9.00e-53
3 2wts:A 197 170 0.4216 0.3959 0.4588 5.43e-50
4 3tbe:A 194 166 0.3892 0.3711 0.4337 7.33e-46 3tbe:B, 3tbe:C, 3tbe:D, 3tbe:E
5 3rcc:N 137 115 0.1892 0.2555 0.3043 1.39e-13 3rcc:A, 3rcc:B, 3rcc:C, 3rcc:D, 3rcc:E, 3rcc:F, 3rcc:G, 3rcc:H, 3rcc:I, 3rcc:J, 3rcc:K, 3rcc:L, 3rcc:M, 3rcc:R, 3rcc:O, 3rcc:P, 3rcc:Q
6 2rui:A 158 153 0.2270 0.2658 0.2745 5.04e-13
7 7f87:A 145 128 0.1838 0.2345 0.2656 2.10e-10 7f87:B
8 7s4o:A 170 133 0.2108 0.2294 0.2932 2.49e-10 7s4o:B, 7s51:A, 7s51:B, 7t8y:A, 7t8z:A, 8t8g:A, 7v6k:A, 7v6k:B
9 2kid:A 148 142 0.2324 0.2905 0.3028 4.33e-06 2mlm:A, 6r1v:A, 1t2w:A
10 5go5:A 152 135 0.1946 0.2368 0.2667 0.008
11 2c59:A 364 95 0.1405 0.0714 0.2737 0.36 2c54:A, 2c54:B, 2c59:B, 2c5a:A, 2c5a:B, 2c5e:A, 2c5e:B, 8sg0:A, 8sg0:B, 8skb:A, 8skb:B, 8skb:C, 8skb:D
12 4v4n:AJ 132 79 0.1135 0.1591 0.2658 0.53 4v6u:BJ
13 4f21:E 206 37 0.0919 0.0825 0.4595 2.5
14 3j7a:P 127 46 0.0595 0.0866 0.2391 4.2 3jbn:P, 3jbo:P, 3jbp:P, 6okk:P, 8tpu:SP
15 8get:C 659 38 0.0811 0.0228 0.3947 6.6 8ges:A, 8ges:D, 8ges:C, 8ges:B, 8get:A, 8get:B, 8get:D, 6mvh:A, 6mvh:B, 6mvh:C
16 1xfu:A 735 85 0.1243 0.0313 0.2706 6.8 1k90:A, 1k90:C, 1lvc:A, 1lvc:C, 1pk0:A, 1pk0:C, 1s26:A, 1s26:C, 1sk6:C, 1xfu:B, 1xfu:C, 1xfu:D, 1xfu:E, 1xfu:F, 1xfv:A, 1xfv:B, 1xfv:C, 1xfv:D, 1xfv:E, 1xfv:F, 1xfw:A, 1xfw:B, 1xfw:C, 1xfw:D, 1xfw:E, 1xfw:F, 1xfx:A, 1xfx:B, 1xfx:C, 1xfx:D, 1xfx:E, 1xfx:F, 1xfy:A, 1xfy:B, 1xfy:C, 1xfy:D, 1xfy:E, 1xfy:F, 1xfz:A, 1xfz:B, 1xfz:C, 1xfz:D, 1xfz:E, 1xfz:F, 1y0v:A, 1y0v:B, 1y0v:C, 1y0v:D, 1y0v:E, 1y0v:F
17 6fyx:O 129 46 0.0595 0.0853 0.2391 7.4 7a1g:Z, 7ajt:DO, 7aju:DO, 7b7d:Z, 8bn3:C4, 8bqd:Z, 8bqx:Z, 8c00:Z, 8c01:Z, 8c3a:Q, 8c3a:DB, 8cah:Z, 8cas:Z, 8cbj:O, 8ccs:q, 8cdl:q, 8cdr:q, 8ceh:q, 8cf5:q, 8cg8:q, 8cgn:q, 8civ:q, 8cku:q, 8cmj:q, 8cq7:Q, 8cq7:DB, 8cqw:Q, 8cqw:DB, 8cre:Q, 8cre:DB, 7d4i:SP, 7d5s:SP, 7d5t:SP, 7d63:SP, 5dat:C4, 5dat:c4, 5dc3:C4, 5dc3:c4, 5dge:C4, 5dge:c4, 5dgf:C4, 5dgf:c4, 5dgv:C4, 5dgv:c4, 6eml:Z, 8eub:BO, 8evp:BO, 8evq:BO, 8evr:BO, 8evs:BO, 8evt:BO, 8ewb:BO, 8ewc:BO, 6fai:O, 5fci:C4, 5fci:c4, 5fcj:C4, 5fcj:c4, 6fyy:O, 6gq1:AE, 6gqb:AE, 6gqv:AE, 6gsm:O, 6gsn:O, 6hhq:P, 6hhq:c4, 5i4l:C4, 5i4l:c4, 6i7o:Z, 6i7o:Zb, 8i7j:O, 5it7:O, 5it9:O, 3j6x:14, 3j6y:14, 3j77:14, 3j78:14, 3j80:O, 3j81:O, 3jam:O, 3jap:O, 5jpq:w, 5juo:LB, 5jup:LB, 5jus:LB, 5jut:LB, 5juu:LB, 8k2d:SO, 8k82:SO, 6ke6:SP, 5ll6:Z, 6lqp:SP, 6lqq:SP, 6lqr:SP, 6lqs:SP, 6lqt:SP, 6lqu:SP, 5lyb:C4, 5lyb:c4, 5m1j:O2, 5mc6:Z, 5mei:c4, 5mei:P, 7mpi:BO, 7mpj:BO, 7n8b:BO, 5ndg:C4, 5ndg:c4, 5ndv:C4, 5ndv:c4, 5ndw:C4, 5ndw:c4, 7nrc:SZ, 7nrd:SZ, 5obm:C4, 5obm:c4, 8oeq:Q, 8oeq:DB, 5on6:c4, 5on6:P, 7osa:uS11, 7osm:uS11, 7pzy:P, 7q08:P, 7q0f:P, 7q0p:P, 7q0r:P, 8q5i:P, 6q8y:Z, 6rbd:O, 7rr5:SO, 8rw1:O, 6s47:BP, 8s8d:O, 8s8e:O, 8s8f:O, 8s8g:O, 8s8h:O, 8s8i:O, 8s8j:O, 6snt:O, 7suk:NG, 6sv4:Z, 6sv4:Zb, 6sv4:Zc, 6t4q:SO, 6t7i:SO, 6t7t:SO, 6t83:Ob, 6t83:p, 5tbw:P, 5tbw:c4, 6tb3:Z, 5tga:C4, 5tga:c4, 5tgm:C4, 5tgm:c4, 6tnu:Z, 4u3m:C4, 4u3m:c4, 4u3n:C4, 4u3n:c4, 4u3u:C4, 4u3u:c4, 4u4n:C4, 4u4n:c4, 4u4o:C4, 4u4o:c4, 4u4q:C4, 4u4q:c4, 4u4r:C4, 4u4r:c4, 4u4u:C4, 4u4u:c4, 4u4y:C4, 4u4y:c4, 4u4z:C4, 4u4z:c4, 4u50:C4, 4u50:c4, 4u51:C4, 4u51:c4, 4u52:C4, 4u52:c4, 4u53:C4, 4u53:c4, 4u55:C4, 4u55:c4, 4u56:C4, 4u56:c4, 4u6f:C4, 4u6f:c4, 4uer:K, 6uz7:O, 4v4b:AK, 4v6i:AK, 4v7h:AK, 4v7r:AH, 4v7r:CH, 4v88:AO, 4v88:CO, 4v8y:AO, 4v8z:AO, 4v92:BO, 5wlc:NG, 6woo:OO, 7wtl:SO, 7wtm:SO, 7wtn:SO, 7wto:SO, 7wtp:SO, 7wtq:SO, 7wtr:SO, 5wyj:SP, 5wyk:SP, 6xiq:AE, 6xir:AE, 8y0u:SO, 6y7c:O, 6z6j:SO, 6z6k:SO, 6zce:P, 7zpq:AO, 6zqa:DO, 6zqb:DO, 6zqc:DO, 6zqd:DO, 6zqe:DO, 6zqf:DO, 6zqg:DO, 7zrs:AO, 6zu9:Z, 7zuw:AO, 7zux:DO, 6zvi:w, 7zw0:sZ
18 1i6u:A 129 62 0.0973 0.1395 0.2903 7.5 1i6u:B
19 1rv3:B 466 37 0.0703 0.0279 0.3514 9.3 1cj0:A, 1ls3:A, 1ls3:B, 1ls3:C, 1ls3:D, 1rv3:A, 1rv4:A, 1rv4:B, 1rvu:A, 1rvu:B, 1rvy:A, 1rvy:B
20 6edw:B 746 65 0.1081 0.0268 0.3077 9.5 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
21 6edw:C 724 65 0.1081 0.0276 0.3077 9.6 6ee1:A, 6ee1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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