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BioLiP
>protein
AGMFRALFRQAVEDDRYGEFLDVLAEASAFRPQFASPEACSERLDPVLLAGGPTDEGRAVLVGCTGTAANGGPHEFLRLS
TSFQEERDFLAVPLPGYGTGGTALLPADLDTALDAQARAILRAAGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIV
LVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRA
HWDLPHTVADVPGDHFTMMRDHAPAVAEAVLSWLDAIEG

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h7y:A 280 280 1.0000 0.9964 0.9964 0.0 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
2 5d3k:A 269 272 0.4122 0.4275 0.4228 9.77e-57 5d3z:A
3 7vo5:A 276 274 0.3297 0.3333 0.3358 1.43e-33
4 6fw5:A 233 232 0.1900 0.2275 0.2284 4.01e-05 6fvj:D, 6fvj:E, 6fw5:B, 6fw5:D
5 6fvj:B 212 222 0.1864 0.2453 0.2342 5.49e-05 6fvj:A, 6fvj:C, 6fvj:F, 6fvj:G, 6fvj:H, 6fw5:C
6 6n8e:A 1332 196 0.1935 0.0405 0.2755 0.054
7 4pse:A 220 51 0.0573 0.0727 0.3137 0.15 4pse:B
8 2vsq:A 1273 119 0.1183 0.0259 0.2773 0.21
9 6hiv:DA 1557 66 0.0681 0.0122 0.2879 0.30 6hiw:DA, 7pub:DA
10 6hiy:DA 1426 66 0.0681 0.0133 0.2879 0.33
11 6rrp:B 450 102 0.1004 0.0622 0.2745 0.42
12 4zxh:A 1314 54 0.0681 0.0145 0.3519 0.91 4zxi:A
13 5ja2:A 1238 120 0.1183 0.0267 0.2750 1.4 5ja1:A, 5t3d:A
14 6eyv:A 459 69 0.0789 0.0479 0.3188 1.6 6eyv:B, 6rrp:A, 6rrq:A, 6rrq:B
15 6ecf:D 265 236 0.1971 0.2075 0.2331 2.6 6ece:A, 6ecf:A, 6ecf:B, 6ecf:C, 6ecf:E, 6ecf:F
16 3jcs:K 156 56 0.0609 0.1090 0.3036 3.3
17 8sbq:A 277 91 0.1075 0.1083 0.3297 3.8 8g49:A, 8sbq:B, 8t88:A, 8t88:B, 8tfw:A, 8tfw:B
18 5txe:A 652 32 0.0358 0.0153 0.3125 3.8 5txe:B
19 6j3f:A 254 88 0.0968 0.1063 0.3068 3.9 6j3f:B
20 5n0a:L 110 33 0.0358 0.0909 0.3030 4.2
21 4qf5:A 459 68 0.0824 0.0501 0.3382 4.5 4qdi:A, 4qf5:B, 4ziy:A
22 3bdv:A 191 61 0.0789 0.1152 0.3607 4.8
23 8r9r:A 255 77 0.0753 0.0824 0.2727 5.3
24 6ecd:A 245 23 0.0466 0.0531 0.5652 6.7 6ece:B
25 6e6t:A 266 47 0.0645 0.0677 0.3830 8.1 6e6t:B
26 5twj:C 157 76 0.0824 0.1465 0.3026 8.3 5twj:D, 5twj:A, 5twj:B, 5twk:C, 5twk:D, 5twk:A, 5twk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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