Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGDIEAGKAKAAVCAACHGQNGISQVPIYPNLAGQKEQYLVAALKAYKAGQRQGGQAPVMQGQATALSDADIANLAAYYA
SNPAAA

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1cno:G 87 86 1.0000 0.9885 1.0000 6.38e-56 1cno:A, 1cno:B, 1cno:C, 1cno:D, 1cno:E, 1cno:F, 1cno:H
2 2zzs:A 81 80 0.6163 0.6543 0.6625 3.12e-28 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
3 4o1w:A 79 80 0.5465 0.5949 0.5875 3.59e-27 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
4 1etp:A 190 87 0.4767 0.2158 0.4713 2.48e-18 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
5 1etp:A 190 67 0.2674 0.1211 0.3433 1.04e-06 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
6 8yts:A 83 77 0.4302 0.4458 0.4805 1.82e-16 8yts:B
7 8smr:K 181 69 0.3837 0.1823 0.4783 1.42e-14 6q2u:A, 8smr:N, 8snh:K, 8snh:N
8 8smr:K 181 67 0.2558 0.1215 0.3284 3.82e-06 6q2u:A, 8smr:N, 8snh:K, 8snh:N
9 8uf3:A 187 79 0.4070 0.1872 0.4430 9.90e-14 8uf3:B
10 8uf3:A 187 75 0.2907 0.1337 0.3333 2.36e-08 8uf3:B
11 1h1o:A 172 69 0.3605 0.1802 0.4493 3.92e-08 1h1o:B
12 1h1o:A 172 68 0.2558 0.1279 0.3235 4.73e-04 1h1o:B
13 5n1t:B 75 76 0.3140 0.3600 0.3553 2.55e-07
14 5lo9:A 471 72 0.3256 0.0594 0.3889 2.68e-07 5lo9:B
15 5lo9:A 471 67 0.2907 0.0531 0.3731 3.75e-05 5lo9:B
16 3vrd:A 174 66 0.2442 0.1207 0.3182 2.86e-04
17 1fcd:C 174 66 0.2326 0.1149 0.3030 4.24e-04 1fcd:D
18 1c53:A 79 66 0.2442 0.2658 0.3182 0.001
19 3dr0:A 93 81 0.3256 0.3011 0.3457 0.008 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
20 3dmi:A 87 91 0.4186 0.4138 0.3956 0.018
21 8smr:G 312 21 0.1512 0.0417 0.6190 0.69
22 4ax3:D 457 86 0.3023 0.0569 0.3023 0.81 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
23 8yqp:A 291 36 0.1860 0.0550 0.4444 0.98
24 8gy3:A 440 70 0.2442 0.0477 0.3000 1.1
25 8gth:E 105 83 0.2791 0.2286 0.2892 2.1 8gth:A, 8gth:B, 8gth:C, 8gth:F, 8gth:D
26 6hc6:C 408 65 0.2558 0.0539 0.3385 2.4 6hc6:A, 6hc6:B, 6hc7:A, 6hc7:B, 6hc7:C
27 5djq:C 303 21 0.1395 0.0396 0.5714 2.5 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
28 1c6o:A 89 80 0.3140 0.3034 0.3375 2.6 1c6o:B, 1c6r:A
29 6u0j:A 309 42 0.1744 0.0485 0.3571 2.9 2g2z:A
30 7vzg:C 193 20 0.1047 0.0466 0.4500 3.4 7vzr:C
31 7ase:f 1523 79 0.2558 0.0144 0.2785 3.4 7ask:F
32 4ltm:A 187 28 0.1395 0.0642 0.4286 4.0 4ltn:A
33 5i34:A 429 31 0.1279 0.0256 0.3548 5.6 5i34:B
34 5dy2:A 378 30 0.1395 0.0317 0.4000 5.9 5dxx:A, 5dxy:A, 5dy3:A
35 2c2c:A 112 91 0.3256 0.2500 0.3077 7.3 3c2c:A
36 1c52:A 131 27 0.1395 0.0916 0.4444 7.9 1dt1:A, 1foc:A, 1foc:B, 2fwl:A, 1qyz:A, 1r0q:A, 3vnw:A
37 1a2s:A 89 69 0.2326 0.2247 0.2899 8.1 1ced:A, 1ctj:A
38 8gy2:B 433 73 0.2209 0.0439 0.2603 9.5

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417