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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCY
PKSDCVIETHKEDELHDM

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1iue:A 98 98 1.0000 1.0000 1.0000 8.36e-69 1iue:B
2 6xtf:D 96 96 0.5816 0.5938 0.5938 3.90e-41 6xtf:C
3 5auk:A 96 96 0.5612 0.5729 0.5729 5.42e-39 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
4 3av8:A 97 97 0.5714 0.5773 0.5773 3.36e-37 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
5 7akt:A 107 94 0.5102 0.4673 0.5319 1.90e-36 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
6 3ab5:A 97 81 0.5306 0.5361 0.6420 2.22e-36 3ab5:B, 3wcq:A
7 1pfd:A 96 95 0.5204 0.5312 0.5368 3.02e-36
8 1rfk:B 97 98 0.5816 0.5876 0.5816 3.92e-36 3p63:A, 3p63:B, 1rfk:A
9 6khi:1 98 97 0.5612 0.5612 0.5670 4.65e-36 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
10 4zho:A 97 95 0.5102 0.5155 0.5263 1.34e-35 4zho:B
11 1awd:A 94 94 0.5204 0.5426 0.5426 1.66e-35
12 6yac:N 97 95 0.5408 0.5464 0.5579 1.68e-35 6yez:N
13 1gaq:B 98 95 0.5408 0.5408 0.5579 3.90e-35 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
14 7s3d:X 97 96 0.5408 0.5464 0.5521 5.26e-35 7s3d:W, 7s3d:x
15 1a70:A 97 95 0.5102 0.5155 0.5263 6.25e-34
16 1czp:A 98 99 0.5510 0.5510 0.5455 1.02e-33 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
17 3b2g:A 98 96 0.5102 0.5102 0.5208 6.56e-33 3b2g:B
18 4fxc:A 98 99 0.5000 0.5000 0.4949 1.00e-31
19 5h57:A 97 97 0.5204 0.5258 0.5258 1.06e-31 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
20 6vjv:A 96 94 0.4796 0.4896 0.5000 1.48e-31 6vjv:B
21 7y5e:NN 99 81 0.4592 0.4545 0.5556 2.03e-31 7y5e:N2, 7y7a:N7, 7y7a:No
22 6iri:A 107 99 0.4694 0.4299 0.4646 1.46e-30
23 4itk:A 104 94 0.4694 0.4423 0.4894 3.95e-30
24 4zhp:A 98 95 0.4898 0.4898 0.5053 4.67e-30
25 1frr:A 95 94 0.4388 0.4526 0.4574 5.53e-28 1frr:B
26 1wri:A 93 93 0.4490 0.4731 0.4731 4.28e-27
27 8jc1:A 267 84 0.4592 0.1685 0.5357 1.56e-26 8jc1:B, 8jc1:C, 8jc1:D
28 4n58:A 266 80 0.4796 0.1767 0.5875 6.49e-26 4n58:B, 4n59:A, 4n59:B
29 1frd:A 98 97 0.4796 0.4796 0.4845 5.16e-21
30 1doi:A 128 73 0.3265 0.2500 0.4384 6.99e-16
31 1e0z:A 128 79 0.3469 0.2656 0.4304 1.25e-14 1e10:A
32 1jq4:A 98 89 0.3878 0.3878 0.4270 5.99e-13
33 1krh:A 337 98 0.3061 0.0890 0.3061 2.05e-12 1krh:B
34 4wqm:A 326 87 0.2755 0.0828 0.3103 2.50e-10
35 3zyy:X 628 77 0.2245 0.0350 0.2857 1.20e-08 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
36 5ogx:A 333 86 0.2449 0.0721 0.2791 8.22e-08
37 2pia:A 321 78 0.2551 0.0779 0.3205 5.42e-07
38 6laa:A 753 82 0.2449 0.0319 0.2927 1.44e-06 6gii:A, 6ldl:A
39 7c3b:B 306 87 0.2449 0.0784 0.2759 5.64e-06
40 7c3b:C 334 87 0.2449 0.0719 0.2759 5.73e-06 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
41 6kbh:A 765 57 0.1633 0.0209 0.2807 0.001
42 7ylr:A 326 61 0.1633 0.0491 0.2623 0.001
43 6icm:D 87 64 0.1837 0.2069 0.2812 0.005
44 5frt:E 105 69 0.1429 0.1333 0.2029 0.036 5ffi:E
45 5frt:A 119 69 0.1429 0.1176 0.2029 0.047 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
46 2wlb:A 103 36 0.1633 0.1553 0.4444 0.062 2wlb:B
47 1i7h:A 109 61 0.1837 0.1651 0.2951 0.062 1i7h:B, 1i7h:C
48 2mjd:A 115 45 0.1837 0.1565 0.4000 0.20 2mje:A
49 7wff:c 128 73 0.2347 0.1797 0.3151 0.21 7wg5:c
50 7d6v:B 239 50 0.1224 0.0502 0.2400 0.31 7d6x:B
51 7ou2:B 650 36 0.1327 0.0200 0.3611 0.39
52 7ou2:A 721 36 0.1327 0.0180 0.3611 0.39 5akb:E, 7oto:B, 7oto:A, 7ou0:B, 7ou0:A, 7ou4:A, 7ou4:B
53 1ng9:A 794 36 0.1327 0.0164 0.3611 0.40 7ai5:B, 7ai5:A, 7ai6:A, 7ai6:B, 7ai7:A, 7ai7:B, 7aib:B, 7aib:A, 7aic:A, 7aic:B, 5akb:A, 5akb:B, 5akc:A, 5akc:B, 5akc:E, 5akc:F, 5akc:I, 5akc:J, 5akd:A, 5akd:B, 5akd:E, 5akd:F, 5akd:I, 5akd:J, 1e3m:A, 1e3m:B, 6i5f:A, 6i5f:B, 3k0s:A, 3k0s:B, 1ng9:B, 1oh5:A, 1oh5:B, 1oh6:A, 1oh6:B, 1oh7:A, 1oh7:B, 1oh8:A, 1oh8:B, 1w7a:A, 1w7a:B, 1wb9:A, 1wb9:B, 1wbb:A, 1wbb:B, 1wbd:A, 1wbd:B, 2wtu:A, 2wtu:B, 3zlj:A, 3zlj:B
54 3dy5:A 1002 46 0.1327 0.0130 0.2826 2.1 3dy5:C, 1u5u:A, 1u5u:B
55 7awt:G 907 80 0.2143 0.0232 0.2625 2.6 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
56 4bxc:A 929 56 0.1939 0.0205 0.3393 2.9 4bxc:B, 3zgb:A, 3zgb:B, 3zge:A, 3zge:B
57 7eu3:8 119 32 0.1122 0.0924 0.3438 4.0 7f9o:8
58 1nml:A 316 52 0.1939 0.0601 0.3654 4.0 1rz5:A, 1rz6:A
59 5a9z:AS 101 30 0.1224 0.1188 0.4000 4.8 5aa0:AS, 7azo:L21A, 7azo:L21B, 7azs:L21A, 7azs:L21B, 9b00:1V, 9b00:2V, 6b4v:S, 6b4v:WB, 6boh:S, 6boh:XB, 6bok:S, 6bok:VB, 6buw:RV, 6buw:YV, 6bz6:RV, 6bz6:YV, 6bz7:RV, 6bz7:YV, 6bz8:RV, 6bz8:YV, 6c5l:BV, 6c5l:DV, 6cae:1V, 6cae:2V, 6cfj:1V, 6cfj:2V, 6cfk:1V, 6cfk:2V, 6cfl:1V, 6cfl:2V, 8cvj:1V, 8cvj:2V, 8cvk:1V, 8cvk:2V, 8cvl:1V, 8cvl:2V, 5czp:YV, 5czp:RV, 6czr:1V, 6czr:2V, 5d8b:P, 5d8b:LB, 5dfe:YV, 5dfe:RV, 5dox:1V, 5dox:2V, 5doy:1V, 5doy:2V, 5e7k:D8, 5e7k:95, 5e81:D8, 5e81:95, 8ekb:1V, 8ekb:2V, 5el4:D8, 5el4:95, 5el5:D8, 5el5:95, 5el6:D8, 5el6:95, 5el7:D8, 5el7:95, 8ev6:1V, 8ev6:2V, 8ev7:1V, 8ev7:2V, 5f8k:1V, 5f8k:2V, 8fc1:1V, 8fc1:2V, 8fc2:1V, 8fc2:2V, 8fc3:1V, 8fc3:2V, 8fc4:1V, 8fc4:2V, 8fc5:1V, 8fc5:2V, 8fc6:1V, 8fc6:2V, 5fdu:1V, 5fdu:2V, 5fdv:1V, 5fdv:2V, 6fkr:1V, 6fkr:2V, 8fom:RV, 8fom:YV, 8fon:RV, 8fon:YV, 8g29:1V, 8g29:2V, 8g2a:1V, 8g2a:2V, 8g2b:1V, 8g2b:2V, 8g2c:1V, 8g2c:2V, 8g2d:1V, 8g2d:2V, 6gsj:D8, 6gsj:95, 6gsk:D8, 6gsk:95, 6gsl:D8, 6gsl:95, 6gzq:Q1, 6gzx:Q1, 6gzx:Q2, 6gzz:Q1, 6gzz:Q2, 5hau:1T, 5hau:2T, 5hcp:1V, 5hcp:2V, 5hcq:1V, 5hcq:2V, 5hcr:1V, 5hcr:2V, 5hd1:1V, 5hd1:2V, 5ib7:D8, 5ib7:95, 5ib8:D8, 5ib8:95, 5ibb:D8, 5ibb:95, 5imq:n, 5imr:n, 5j30:RV, 5j30:YV, 5j3c:RV, 5j3c:YV, 5j4b:1V, 5j4b:2V, 5j4c:1V, 5j4c:2V, 5j4d:S, 5j4d:XB, 5j8b:V, 7jql:1V, 7jql:2V, 7jqm:1V, 7jqm:2V, 4l47:RV, 4l47:YV, 4l71:RV, 4l71:YV, 4lel:RV, 4lel:YV, 4lfz:RV, 4lfz:YV, 7lh5:BV, 7lh5:DV, 4lnt:RV, 4lnt:YV, 4lsk:RV, 4lsk:YV, 4lt8:RV, 4lt8:YV, 7md7:1V, 7md7:2V, 6n1d:AL21, 6n1d:BL21, 6n9e:1V, 6n9e:2V, 6n9f:1V, 6n9f:2V, 5ndj:D8, 5ndj:95, 5ndk:D8, 5ndk:95, 6nd5:1V, 6nd5:2V, 6nd6:1V, 6nd6:2V, 6ndk:RV, 6ndk:YV, 6nsh:RV, 6nsh:YV, 6nta:RV, 6nta:YV, 6nuo:RV, 6nuo:YV, 6nwy:RV, 6nwy:YV, 6o3m:RV, 6o3m:YV, 6o97:1V, 6o97:2V, 6of1:1V, 6of1:2V, 6of6:RV, 6of6:YV, 6oj2:RV, 6oj2:YV, 6ope:RV, 6ope:YV, 6ord:RV, 6ord:YV, 6osi:RV, 6osi:YV, 5ot7:w, 6otr:RV, 6otr:YV, 6oxa:RV, 6oxa:YV, 6oxi:RV, 6oxi:YV, 4p6f:RV, 4p6f:YV, 4p70:RV, 4p70:YV, 6q95:R, 6qnq:D8, 6qnq:95, 6qnr:D8, 6qnr:95, 7rq8:1V, 7rq8:2V, 7rq9:1V, 7rq9:2V, 7rqa:1V, 7rqa:2V, 7rqb:1V, 7rqb:2V, 7rqc:1V, 7rqc:2V, 7rqd:1V, 7rqd:2V, 7rqe:1V, 7rqe:2V, 8t8b:1V, 8t8b:2V, 8t8c:1V, 8t8c:2V, 4tua:RV, 4tua:YV, 4tub:RV, 4tub:YV, 4tuc:RV, 4tuc:YV, 4tud:RV, 4tud:YV, 4tue:RV, 4tue:YV, 7u2h:1V, 7u2h:2V, 7u2i:1V, 7u2i:2V, 7u2j:1V, 7u2j:2V, 6ucq:1V, 6ucq:2V, 8ud6:1V, 8ud6:2V, 8ud7:1V, 8ud7:2V, 8ud8:1V, 8ud8:2V, 6uo1:1V, 6uo1:2V, 5uq7:V, 5uq8:V, 8uvr:1V, 8uvr:2V, 8uvs:1V, 8uvs:2V, 4v4i:P, 4v4j:P, 4v4x:BU, 4v4y:BU, 4v4z:BU, 4v51:BV, 4v51:DV, 4v5a:BV, 4v5a:DV, 4v5c:BV, 4v5c:DV, 4v5d:BV, 4v5d:DV, 4v5e:BV, 4v5e:DV, 4v5f:BV, 4v5f:DV, 4v5g:BV, 4v5g:DV, 4v5j:BV, 4v5j:DV, 4v5k:BV, 4v5k:DV, 4v5l:BV, 4v5m:BV, 4v5n:BV, 4v5p:BV, 4v5p:DV, 4v5q:BV, 4v5q:DV, 4v5r:BV, 4v5r:DV, 4v5s:BV, 4v5s:DV, 4v63:BV, 4v63:DV, 4v67:BV, 4v67:DV, 4v68:BV, 4v6a:BV, 4v6a:DV, 4v6f:A2, 4v6f:D2, 4v6g:B2, 4v6g:D2, 4v7j:AV, 4v7j:BV, 4v7k:AV, 4v7k:BV, 4v7l:BV, 4v7l:DV, 4v7m:BV, 4v7m:DV, 4v7p:BR, 4v7p:CR, 4v7w:BV, 4v7w:DV, 4v7x:BV, 4v7x:DV, 4v7y:BV, 4v7y:DV, 4v7z:BV, 4v7z:DV, 4v83:BR, 4v83:DR, 4v84:BR, 4v84:DR, 4v87:A2, 4v87:D2, 4v8a:AV, 4v8a:BV, 4v8b:B2, 4v8b:D2, 4v8c:A2, 4v8c:B2, 4v8d:B2, 4v8d:D2, 4v8e:A2, 4v8e:C2, 4v8f:A2, 4v8f:D2, 4v8g:BV, 4v8g:DV, 4v8h:BV, 4v8h:DV, 4v8i:BV, 4v8i:DV, 4v8j:BV, 4v8j:DV, 4v8n:BV, 4v8n:DV, 4v8o:BV, 4v8q:AV, 4v8u:BV, 4v8u:DV, 4v8x:BV, 4v8x:DV, 5v8i:1V, 5v8i:2V, 4v90:BV, 4v95:BV, 4v95:DV, 4v97:BV, 4v97:DV, 4v9a:B2, 4v9a:D2, 4v9b:B2, 4v9b:D2, 4v9h:BV, 4v9i:BV, 4v9i:DV, 4v9j:BV, 4v9j:DV, 4v9k:BV, 4v9k:DV, 4v9l:BV, 4v9l:DV, 4v9m:BV, 4v9m:DV, 4v9n:BV, 4v9n:DV, 4v9q:AR, 4v9q:CR, 4v9r:BV, 4v9r:DV, 4v9s:BV, 4v9s:DV, 5vp2:1V, 5vp2:2V, 5vpo:RV, 5vpo:YV, 5vpp:RV, 5vpp:YV, 8vtu:1V, 8vtu:2V, 8vtv:1V, 8vtv:2V, 8vtw:1V, 8vtw:2V, 8vtx:1V, 8vtx:2V, 8vty:1V, 8vty:2V, 1vvj:RV, 1vvj:YV, 1vy4:BV, 1vy4:DV, 1vy5:BV, 1vy5:DV, 1vy6:BV, 1vy6:DV, 1vy7:BV, 1vy7:DV, 4w29:BV, 4w29:DV, 4w2e:V, 4w2f:BV, 4w2f:DV, 4w2g:BV, 4w2g:DV, 4w2h:BV, 4w2h:DV, 4w2i:BV, 4w2i:DV, 4w4g:RV, 4w4g:YV, 5w4k:1V, 5w4k:2V, 5wis:1V, 5wis:2V, 5wit:1V, 5wit:2V, 4wpo:AV, 4wpo:CV, 4wq1:D8, 4wq1:95, 4wqf:AV, 4wqf:CV, 4wqr:D8, 4wqr:95, 4wqu:AV, 4wqu:CV, 4wqy:AV, 4wqy:CV, 4wr6:D8, 4wr6:95, 4wra:D8, 4wra:95, 4wro:D8, 4wsd:D8, 4wsd:95, 4wsm:D8, 4wsm:95, 4wt1:D8, 4wt1:95, 4wt8:CU, 4wt8:DU, 4wu1:D8, 4wu1:95, 4wzd:D8, 4wzd:95, 4wzo:D8, 4wzo:95, 4xej:AL21, 4xej:BL21, 6xhv:1V, 6xhv:2V, 6xhw:1V, 6xhw:2V, 6xhx:1V, 6xhx:2V, 6xhy:1V, 6xhy:2V, 6xqd:1V, 6xqd:2V, 6xqe:1V, 6xqe:2V, 4y4o:1V, 4y4o:2V, 4y4p:1V, 4y4p:2V, 4ypb:RV, 4ypb:YV, 4yzv:RV, 4yzv:YV, 4z3s:1V, 4z3s:2V, 4z8c:1V, 4z8c:2V, 4zer:1V, 4zer:2V, 5zlu:o, 4zsn:RV, 4zsn:YV
60 4is1:D 54 20 0.1122 0.2037 0.5500 8.3 4f2j:C, 4is1:C, 3uk3:C, 3uk3:D
61 8kdb:A 2117 45 0.1224 0.0057 0.2667 9.9 8kdc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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