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BioLiP
>protein
AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFANKRAKIKKS

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m3d:C 108 53 0.9623 0.4722 0.9623 3.41e-29 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
2 6m3d:C 108 49 0.8679 0.4259 0.9388 3.57e-26 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
3 4qtr:C 57 53 0.6604 0.6140 0.6604 1.14e-15 4qtr:A, 4qtr:B, 4qtr:D
4 4rdu:D 62 51 0.5094 0.4355 0.5294 3.00e-13 4rdu:A, 4xrs:I, 4xrs:G
5 8eml:A 58 52 0.5094 0.4655 0.5192 6.72e-13 8eml:B
6 2me6:A 71 52 0.4906 0.3662 0.5000 4.19e-12
7 1b72:A 68 51 0.4717 0.3676 0.4902 4.65e-12
8 4cyc:A 66 52 0.4717 0.3788 0.4808 5.23e-12 1b8i:A
9 4uus:A 67 52 0.4717 0.3731 0.4808 7.19e-12 4uus:E
10 6es3:K 72 52 0.4528 0.3333 0.4615 7.75e-12 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
11 2r5z:A 75 52 0.4906 0.3467 0.5000 1.17e-11 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
12 1ahd:P 68 52 0.4906 0.3824 0.5000 3.30e-11
13 1jgg:A 57 52 0.4340 0.4035 0.4423 3.56e-11 1jgg:B
14 1ig7:A 58 52 0.4528 0.4138 0.4615 8.02e-11
15 1zq3:P 68 51 0.4528 0.3529 0.4706 8.38e-11
16 3rkq:A 58 50 0.4528 0.4138 0.4800 8.94e-10 3rkq:B
17 2h1k:B 60 52 0.4528 0.4000 0.4615 2.43e-09 2h1k:A
18 8pna:A 67 52 0.3962 0.3134 0.4038 3.03e-09 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
19 5flv:M 229 51 0.4528 0.1048 0.4706 3.93e-09 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
20 1puf:A 77 52 0.4340 0.2987 0.4423 4.01e-09 2lp0:A
21 5eea:G 63 52 0.4151 0.3492 0.4231 4.49e-09 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
22 2ld5:A 67 52 0.3774 0.2985 0.3846 9.57e-09
23 3a01:F 61 52 0.3962 0.3443 0.4038 1.39e-08 3a01:B, 3lnq:A
24 1nk2:P 77 52 0.3962 0.2727 0.4038 3.15e-08 1nk3:P
25 2lkx:A 68 51 0.3774 0.2941 0.3922 6.70e-08
26 4rbo:A 55 52 0.4151 0.4000 0.4231 8.36e-08 4rbo:D
27 1fjl:A 65 52 0.3774 0.3077 0.3846 8.91e-08 1fjl:B, 1fjl:C
28 3cmy:A 60 52 0.3585 0.3167 0.3654 2.24e-07
29 8osb:E 62 52 0.3774 0.3226 0.3846 2.58e-07
30 5zjr:A 64 53 0.4151 0.3438 0.4151 4.54e-07 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
31 3a01:A 78 49 0.3396 0.2308 0.3673 1.27e-06 3a01:E
32 6e8c:A 135 49 0.3774 0.1481 0.4082 2.10e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 49 0.2642 0.1037 0.2857 0.005 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 5hod:A 61 52 0.3585 0.3115 0.3654 7.32e-06 5hod:D
35 8ejo:A 56 49 0.3208 0.3036 0.3469 1.51e-05 8ejo:B, 8ejp:A, 8ejp:B
36 8ik5:C 67 28 0.2453 0.1940 0.4643 7.37e-04 8ike:C, 8ilw:C
37 1lfu:P 82 37 0.2453 0.1585 0.3514 0.003 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
38 1le8:A 53 51 0.2453 0.2453 0.2549 0.004 1akh:A, 1yrn:A
39 4egc:A 539 38 0.2264 0.0223 0.3158 0.022
40 4j19:A 77 63 0.3208 0.2208 0.2698 0.052 4j19:B
41 9b8u:B 66 45 0.2264 0.1818 0.2667 0.053 9b8u:A, 9b8u:C, 9b8u:D
42 3d1n:I 150 53 0.2264 0.0800 0.2264 0.062 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
43 8g8e:X 140 27 0.1887 0.0714 0.3704 0.10 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
44 1gt0:C 137 43 0.2453 0.0949 0.3023 0.17 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
45 5wc9:A 136 43 0.2264 0.0882 0.2791 0.21 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
46 3l1p:A 147 26 0.1698 0.0612 0.3462 0.38 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
47 4g0k:A 327 38 0.2642 0.0428 0.3684 0.39 4g0k:B, 4g0l:A, 4g0l:B, 3r3e:A, 3r3e:B
48 8bx1:A 127 25 0.1698 0.0709 0.3600 0.57
49 1mnm:C 77 34 0.2453 0.1688 0.3824 0.95 1mnm:D
50 1akh:B 78 34 0.2453 0.1667 0.3824 1.0 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
51 8si6:A 1107 27 0.1887 0.0090 0.3704 1.7 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D
52 8ui7:A 643 31 0.2453 0.0202 0.4194 3.0 8ui8:A, 8ui9:A, 8uii:A
53 6fqp:A 67 38 0.2264 0.1791 0.3158 3.8 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
54 8fip:A 338 23 0.1887 0.0296 0.4348 4.0 8fio:A, 8fio:B, 8fip:B
55 7mq8:LH 746 33 0.2264 0.0161 0.3636 4.6 7mq9:LH, 7mqa:LH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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