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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AFGRATHAVVRALPESLGQHALRSGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALI
TRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD
GLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYE
KLKDHMLIPVSMSELEKVDGLLTCCSVLINKK

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jaj:B 281 272 0.9816 0.9502 0.9816 0.0 2c6z:A, 2ci6:A, 2ci7:A, 6dge:A, 3i4a:A, 3i4a:B, 2jai:A, 2jaj:A, 3p8e:A, 3p8e:B, 3p8p:A, 3p8p:B, 6szp:A, 7ulu:A, 7ulu:B, 7ulv:A, 7ulv:B, 7ulv:C, 7ulv:D, 7ulv:E, 7ulv:F, 7ulx:A, 7ulx:B
2 1h70:A 255 244 0.2721 0.2902 0.3033 4.38e-28 3bpb:A, 3bpb:B, 3rhy:A, 3rhy:B
3 6k32:A 1208 35 0.0551 0.0124 0.4286 0.37 3jb7:A, 6ty9:A, 6tz1:A, 6tz2:A
4 3jb6:A 1196 35 0.0551 0.0125 0.4286 0.40 5h0r:F, 6ty8:A
5 4s28:A 520 44 0.0588 0.0308 0.3636 5.1 4n7q:A, 4s25:A, 4s26:A, 4s26:B, 4s27:A, 4s29:A
6 3ob8:A 1024 19 0.0404 0.0107 0.5789 6.4 3ob8:B, 3ob8:D, 3ob8:C, 3oba:A, 3oba:C, 3oba:D, 3oba:B
7 8sre:A 1377 81 0.0735 0.0145 0.2469 6.8 8sr7:A, 8sr7:B, 8sr7:C, 8sr7:D, 8src:A, 8src:B, 8src:C, 8src:D, 8srd:A, 8srd:B, 8srd:C, 8srd:D, 8sre:B, 8sre:D, 8sre:C, 8srf:A, 8srf:B, 8srf:C, 8srf:D, 8srg:A, 8srg:B, 8srg:C, 8srg:D, 8srh:A, 8srh:B, 8srh:C, 8srh:D, 8sri:A, 8sri:B, 8sri:C, 8sri:D, 8srj:A, 8srj:B, 8srj:D, 8srj:C, 8srk:A, 8srk:B, 8srk:C, 8srk:D
8 7l07:A 214 39 0.0625 0.0794 0.4359 8.3
9 8hl1:AEFG 725 135 0.1287 0.0483 0.2593 8.4 8hl2:AEFG, 8hl3:AEFG, 8hl4:AEFG

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218