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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFGENLVP
EDRLQKEMERIYPGE

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a68:O 95 95 1.0000 1.0000 1.0000 1.38e-66 2a69:E, 2a69:O, 1iw7:E, 1iw7:O, 1smy:E
2 7vlf:D 149 60 0.1684 0.1074 0.2667 3.0 7vlc:D, 7vlc:H, 7vld:D, 7vld:H, 7vle:D, 7vle:H, 7vlf:H, 3wct:D, 3wct:H, 3wcu:D, 3wcu:H, 3wcv:D, 3wcv:H, 3wcw:D, 3wcw:H
3 3qrx:A 145 29 0.1368 0.0897 0.4483 5.8 1oqp:A
4 6k0a:F 95 24 0.1158 0.1158 0.4583 8.2 6k0b:E, 6k0b:F
5 4by9:E 227 27 0.1053 0.0441 0.3704 8.6 4by9:K, 3nmu:F, 3nmu:J, 3nvk:I, 3nvk:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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