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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AEIYNKDGNKLDLYGKIDGLHYFSDDKSVDGDQTYMRVGVKGETQINDQLTGYGQWEYNVQANNTESSSDQAWTRLAFAG
LKFGDAGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQGKNGSVSGE
GATNNGRGWSKQNGDGFGTSLTYDIWDGISAGFAYSHSKRTDEQNSVPALGRGDNAETYTGGLKYDANNIYLASRYTQTY
NATRAGSLGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDLERGYGDQDILKYVDVGATYYFNKNMSTYVDYKINLLD
DNSFTRNAGISTDDVVALGLVYQF

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pyz:F 347 346 0.9971 0.9885 0.9913 0.0 5nup:A, 5nup:B, 5nup:C, 5o79:C, 5o79:A, 5o79:B, 8pyz:E, 8pyz:C, 7q3t:A, 7q3t:B, 7q3t:C, 7q3t:E, 7q3t:D, 7q3t:F, 6rck:C, 6rd3:A, 6rd3:B, 6rd3:C, 6rd3:D, 6rd3:E, 6rd3:F, 7szi:C
2 5o9c:A 348 349 0.8924 0.8822 0.8797 0.0 5o9c:D, 5o9c:B
3 2j1n:A 346 348 0.7965 0.7919 0.7874 0.0 8i8r:A, 8i8r:C, 8i8r:B, 8i8x:A, 8i8x:C, 8i8x:B, 2j1n:B, 2j1n:C
4 5fvn:A 342 344 0.8198 0.8246 0.8198 0.0 5fvn:B, 5fvn:C, 5fvn:D, 5fvn:E, 5fvn:F
5 2xe5:B 343 345 0.7820 0.7843 0.7797 0.0 2xe5:D
6 6ene:A 329 346 0.6366 0.6657 0.6329 2.96e-138 6ene:C, 6ene:B
7 5o77:A 337 351 0.5988 0.6113 0.5869 3.08e-128
8 6zhp:B 341 356 0.6047 0.6100 0.5843 2.41e-127 7fdy:A, 7fdy:B, 7fdy:C, 7ff7:A, 7ff7:B, 7ff7:C, 3fyx:A, 4gcp:A, 4gcp:B, 4gcq:A, 4gcq:B, 4gcs:A, 1gfm:A, 1gfn:A, 1gfo:A, 1gfp:A, 1gfq:A, 4lse:A, 4lse:B, 4lse:C, 4lsi:A, 4lsi:B, 4lsi:C, 1mpf:A, 5nuo:C, 5nuo:A, 5nuo:E, 5nuq:A, 5nuq:B, 5nuq:D, 5nuq:F, 5nur:E, 5nur:C, 5nur:A, 3o0e:A, 3o0e:F, 3o0e:C, 3o0e:D, 3o0e:E, 3o0e:B, 2omf:A, 2zfg:A, 6zhv:B, 6zhv:A, 6zhv:C, 2zld:A, 2zld:B
9 5nxu:A 352 358 0.5669 0.5540 0.5447 8.52e-122 5nxu:B, 5nxu:C
10 4kr8:C 340 353 0.5494 0.5559 0.5354 5.89e-117 4kr4:C, 4kra:C
11 6ehb:C 320 350 0.2442 0.2625 0.2400 1.30e-11 6ehb:B, 6ehc:A, 6ehc:B, 5onu:A, 5onu:B, 5onu:C
12 6tby:AAA 320 43 0.0552 0.0594 0.4419 1.2 6tc5:AAA
13 6ehd:A 322 61 0.0523 0.0559 0.2951 3.6 6ehe:A, 6ehf:A
14 4p0d:A 471 64 0.0494 0.0361 0.2656 4.7
15 1g4d:A 69 36 0.0378 0.1884 0.3611 6.0
16 7zmq:A 443 34 0.0349 0.0271 0.3529 6.7 5lb3:B, 5lb3:E, 5lb5:A, 5lb5:B, 5lb5:C, 5lb5:D, 5lb8:A, 5lb8:D, 5lba:B, 5lba:A, 5lba:C, 5lba:D, 7zml:A, 7zml:B, 7zml:C, 7zml:D, 7zmm:B, 7zmm:A, 7zmm:C, 7zmm:D, 7zmn:A, 7zmn:B, 7zmo:A, 7zmo:B, 7zmp:A, 7zmp:B, 7zmq:B, 7zmr:A, 7zmr:B, 7zms:A, 7zmt:A, 7zmt:B, 7zmv:A, 7zmv:B, 7zmv:C, 7zmv:D
17 1nrg:A 213 85 0.0610 0.0986 0.2471 7.3 6h00:A, 3hy8:A, 8qyt:A, 8qyw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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