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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AEIARSSVENAQMRFNSGKSIIVNKNNPAESFKRLNRIMFENNIPGDKRSQRFYMKPGKVAELKRSQRHRKEFMMGFKRL
IEIVKDAKRKGY

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d8k:T 92 92 1.0000 1.0000 1.0000 5.16e-63 8d8l:T, 5mrc:TT, 5mre:TT, 5mrf:TT, 8om2:T, 8om3:T, 8om4:T
2 6yw5:TT 88 84 0.2500 0.2614 0.2738 0.001 6ywe:TT, 6ywx:TT, 6ywy:TT
3 7a5f:Q6 86 64 0.1739 0.1860 0.2500 0.005 7a5g:Q6, 7a5i:Q6, 7a5k:Q6, 5aj3:U, 5aj4:AU, 8any:AQ, 8csr:Q, 8css:Q, 8cst:Q, 8csu:Q, 6gaw:AU, 6gaz:AU, 3j9m:AQ, 3jd5:U, 8k2a:SW, 7l08:AQ, 6neq:U, 6nf8:U, 7nqh:AU, 7nql:AU, 7nsi:AU, 7nsj:AU, 6nu2:AQ, 6nu3:AQ, 7og4:AQ, 8oin:AQ, 8oip:AQ, 8oir:AQ, 8ois:AQ, 7p2e:Q, 7pnt:Q, 7pnu:Q, 7pnv:Q, 7pnw:Q, 7pnx:Q, 7pny:Q, 7pnz:Q, 7po0:Q, 7po1:Q, 7po2:Q, 7po3:Q, 7qi4:AQ, 7qi5:AQ, 7qi6:AQ, 8qrk:Q, 8qrl:Q, 8qrm:Q, 8qrn:Q, 6rw4:Q, 6rw5:Q, 6vlz:AQ, 6vmi:AQ, 8xt0:SW, 8xt2:SW, 6ydp:AU, 6ydw:AU, 6zm5:AQ, 6zm6:AQ, 6zs9:AQ, 6zsa:AQ, 6zsb:AQ, 6zsc:AQ, 6zsd:AQ, 6zse:AQ, 6zsg:AQ
4 6r4e:A 663 20 0.1087 0.0151 0.5000 1.3 7ndl:A, 7ndl:B, 6r4e:B, 6r4f:A, 6r4f:B, 6r4g:A, 6r4g:B, 6r4h:A, 6r4h:B, 6r4i:A, 6r4i:B, 6r4j:A, 6r4j:B, 6svm:A, 6svm:B, 6svo:A, 6svo:B, 6svp:A, 6svp:B, 6svq:A, 6svq:B, 2v4m:A, 2v4m:B, 2v4m:C, 2v4m:D, 2zj3:A, 2zj4:A, 6zmj:A, 6zmj:B, 6zmk:A, 6zmk:B
5 8tkf:A 2272 44 0.1848 0.0075 0.3864 2.1 8tkf:D, 8tkf:B, 8tkf:C
6 6dr0:C 2193 44 0.1848 0.0078 0.3864 2.3 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D
7 7y1n:A 1171 47 0.1413 0.0111 0.2766 2.7 7vlr:A, 7vls:A, 7vlt:A, 7vlu:A, 7y1k:A, 7y1m:A
8 7y1j:A 1204 47 0.1413 0.0108 0.2766 2.7
9 7mit:E 1438 47 0.1413 0.0090 0.2766 2.7 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A
10 4f9b:A 318 44 0.1630 0.0472 0.3409 4.0 4f99:A, 4f9a:A, 4f9a:C, 4f9b:C, 4f9c:A
11 5h3t:C 657 42 0.1304 0.0183 0.2857 8.4 5h3t:A, 5h3t:B, 5h3t:D
12 5h1k:B 690 42 0.1304 0.0174 0.2857 8.4 5gxh:A, 5gxi:A, 5h1k:A, 5h1l:A, 5h1m:A, 5h3u:A, 5tef:A, 5tha:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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