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BioLiP
>protein
ADYKIDKEGQHAFIEFRIKHLGYSWLYGRFNDFDGSFTFDEKNPSADKVKVTINTNSVDTNHAERDKHLRSGDFLNVSKN
PTATFESTEVKANGDSADITGNLTLNGVTKPVTIKAKLIGQGDDPWGGYRAGFEGSATLKLKDFGIKMDLGPASQEVELL
LSVEGIRQ

The query sequence (length=168) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bwl:A 168 168 1.0000 1.0000 1.0000 9.08e-124
2 1y0g:A 169 168 0.7857 0.7811 0.7857 1.80e-98 1y0g:B, 1y0g:C, 1y0g:D
3 1wub:A 176 163 0.3214 0.3068 0.3313 6.58e-25
4 5w2r:A 171 164 0.2976 0.2924 0.3049 2.40e-18 5w2z:A, 5w30:A, 5w39:A, 5w3a:A, 5w3c:A
5 3hpe:A 164 166 0.2976 0.3049 0.3012 1.70e-17 3hpe:B
6 5ixg:B 169 174 0.3155 0.3136 0.3046 3.92e-15 5ixg:C, 5ixg:A, 5ixg:D
7 5ixh:B 161 92 0.1607 0.1677 0.2935 2.77e-05 5ixh:A
8 1a8p:A 257 26 0.0655 0.0428 0.4231 5.5
9 6v39:K 146 51 0.1190 0.1370 0.3922 5.5 7m4v:K, 7m4w:K, 7m4x:K, 7m4y:K, 7m4z:K, 7ryf:K, 7ryg:K, 7ryh:K, 7uvv:K, 7uvw:K, 7uvx:K, 7uvy:K, 7uvz:K, 7uw1:K, 6v3a:K, 6v3b:K, 6v3d:K, 6yhs:H, 6ysi:H
10 3fpz:A 311 51 0.0952 0.0514 0.3137 7.7 3fpz:B, 4y4l:A, 4y4l:B, 4y4l:C, 4y4l:D
11 2cyc:A 371 42 0.0774 0.0350 0.3095 9.8 2cyc:B
12 3crz:A 257 21 0.0655 0.0428 0.5238 9.9 2qdx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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