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BioLiP
>protein
ADVVTYENAAGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ehj:A 68 68 0.9706 0.9706 0.9706 7.39e-43 1f22:A, 1hh5:A, 1kwj:A, 1l3o:A, 1lm2:A, 1new:A
2 3bxu:A 71 71 0.5147 0.4930 0.4930 6.22e-13 3bxu:B
3 3h33:A 72 68 0.4559 0.4306 0.4559 1.94e-12
4 3h34:A 70 69 0.5000 0.4857 0.4928 2.59e-11
5 4haj:A 71 71 0.4706 0.4507 0.4507 2.06e-10 4hb6:A, 4hb8:A, 4hbf:A, 4hc3:A, 4hdl:A, 2ldo:A, 2lzz:A, 2mz9:A, 2n91:A, 1os6:A, 3sel:X, 3sj0:X, 3sj1:X, 3sj4:X
6 3h4n:B 69 68 0.5588 0.5507 0.5588 5.27e-10 3h4n:A
7 1aqe:A 110 73 0.2647 0.1636 0.2466 0.041 1czj:A
8 1z1n:X 516 73 0.2941 0.0388 0.2740 0.065
9 1z1n:X 516 91 0.3824 0.0504 0.2857 7.3
10 3cao:A 103 82 0.3824 0.2524 0.3171 0.16 3car:A
11 6f35:A 400 50 0.2206 0.0375 0.3000 0.27 6f35:B
12 1gws:A 503 47 0.2500 0.0338 0.3617 0.50 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
13 1gws:A 503 73 0.3529 0.0477 0.3288 3.5 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
14 2e84:A 513 74 0.3088 0.0409 0.2838 0.82
15 3ov0:A 318 27 0.1471 0.0314 0.3704 1.00 3oue:A, 3ouq:A, 1rwj:A
16 1i1l:A 304 52 0.2206 0.0493 0.2885 2.4 1a3g:A, 1a3g:B, 1a3g:C, 1i1k:A, 1i1k:B, 1i1k:C, 1i1l:B, 1i1l:C, 1i1m:A, 1i1m:B, 1i1m:C, 1iyd:A, 1iyd:B, 1iyd:C, 1iye:A, 1iye:B, 1iye:C
17 6h5l:A 506 47 0.2206 0.0296 0.3191 2.7
18 5c2v:D 770 19 0.1324 0.0117 0.4737 3.6 5c2v:A, 5c2w:A, 5c2w:D
19 2zpu:A 319 33 0.1765 0.0376 0.3636 3.7 1v71:A, 1wtc:A, 2zr8:A
20 5c2v:C 314 48 0.2206 0.0478 0.3125 8.0 5c2v:F, 5c2w:C, 5c2w:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417