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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADVAGTSNRDFRGREQRLFNSEQYNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYRKGQHNDSYD
EYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVG
YSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYG
VALSNRQ

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5axu:A 247 247 0.9919 0.9919 0.9919 0.0 5axv:A, 5exy:A, 5exz:A, 5gqi:A, 5gqj:A, 5gql:A, 5gqm:A, 2oh5:A, 2oh6:A, 2oh7:A, 5yha:A
2 5a9p:A 248 247 0.8381 0.8347 0.8381 2.16e-155 5mqw:A, 4ots:A, 4otv:A
3 5yhb:A 178 238 0.7206 1.0000 0.7479 4.34e-117
4 3pdd:A 190 79 0.0850 0.1105 0.2658 0.13
5 8tfp:A 209 80 0.0972 0.1148 0.3000 1.1 8tfp:L, 8tfq:A, 8tfq:L, 7u09:L, 6vbq:F, 6vbq:L, 6vbq:B, 6vbq:D
6 7w1i:A 497 48 0.0648 0.0322 0.3333 1.2 7w1j:A, 7w1l:A
7 3vuv:A 276 32 0.0405 0.0362 0.3125 6.3
8 3atp:A 151 46 0.0445 0.0728 0.2391 7.0 3atp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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