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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADSVNGAKIFSANCASCHAGGKNLVQAQKTLKKADLEKYGMYSAEAIIAQVTNGKNAMPAFKGRLKPEQIEDVAAYVLGK
ADADWK

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gyd:A 86 86 1.0000 1.0000 1.0000 1.59e-59 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
2 1c6s:A 87 85 0.6628 0.6552 0.6706 1.14e-36 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
3 3ph2:B 85 85 0.6512 0.6588 0.6588 5.98e-34 2v08:A, 2v08:B
4 1kib:A 89 88 0.5930 0.5730 0.5795 3.14e-30 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
5 7y5e:GN 84 84 0.5698 0.5833 0.5833 5.81e-30 7y5e:G2, 7y7a:G7, 7y7a:Go
6 1gdv:A 85 85 0.5814 0.5882 0.5882 1.58e-29
7 3dmi:A 87 82 0.5465 0.5402 0.5732 4.03e-29
8 2zbo:A 86 86 0.5233 0.5233 0.5233 9.62e-29 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
9 1cyj:A 90 89 0.5581 0.5333 0.5393 1.91e-25 1cyi:A
10 1c6o:A 89 86 0.5000 0.4831 0.5000 1.88e-21 1c6o:B, 1c6r:A
11 1a2s:A 89 83 0.4767 0.4607 0.4940 2.73e-21 1ced:A, 1ctj:A
12 1ls9:A 91 79 0.4884 0.4615 0.5316 7.96e-21
13 4eie:A 82 80 0.4302 0.4512 0.4625 3.07e-19 4eif:A
14 3dr0:A 93 77 0.4535 0.4194 0.5065 2.71e-16 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
15 7o38:A 81 77 0.3372 0.3580 0.3766 1.55e-11
16 2dge:A 102 96 0.3837 0.3235 0.3438 2.26e-11 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
17 4kmg:A 88 83 0.3256 0.3182 0.3373 1.33e-10
18 3dp5:A 99 74 0.2791 0.2424 0.3243 1.29e-09 3cu4:A, 5mcs:A, 6u97:A
19 1yiq:A 684 76 0.2442 0.0307 0.2763 3.32e-05
20 8smr:G 312 78 0.2791 0.0769 0.3077 4.20e-05
21 4lji:A 133 94 0.2907 0.1880 0.2660 6.64e-05 4lji:B
22 6xkw:p 254 75 0.3140 0.1063 0.3600 1.18e-04 6xkx:p, 6xkz:p
23 6xkw:p 254 79 0.2674 0.0906 0.2911 0.55 6xkx:p, 6xkz:p
24 6hwh:i 162 80 0.2907 0.1543 0.3125 3.11e-04 6hwh:j
25 6hwh:i 162 87 0.3140 0.1667 0.3103 0.45 6hwh:j
26 6adq:C 223 80 0.2907 0.1121 0.3125 3.18e-04 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
27 6adq:C 223 82 0.3023 0.1166 0.3171 0.68 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
28 2zon:G 81 58 0.2326 0.2469 0.3448 0.003
29 7vzg:C 193 77 0.2791 0.1244 0.3117 0.003 7vzr:C
30 1kv9:A 664 83 0.2442 0.0316 0.2530 0.005
31 6r6m:B 100 68 0.2093 0.1800 0.2647 0.005 6r6n:B, 6r6o:B
32 4dy9:A 108 98 0.3256 0.2593 0.2857 0.005 4ged:B
33 2zoo:A 438 87 0.3140 0.0616 0.3103 0.010
34 8snh:G 304 82 0.3372 0.0954 0.3537 0.012
35 5djq:C 303 73 0.2558 0.0726 0.3014 0.025 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
36 5djq:C 303 80 0.2791 0.0792 0.3000 0.76 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
37 2yk3:A 110 98 0.3140 0.2455 0.2755 0.025 2yk3:B, 2yk3:C
38 7e1w:O 223 81 0.3140 0.1211 0.3333 0.038 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
39 7e1w:O 223 82 0.3023 0.1166 0.3171 0.47 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
40 7vzg:c 145 72 0.2558 0.1517 0.3056 0.040 7vzr:c
41 1e29:A 135 33 0.1628 0.1037 0.4242 0.042 7n8o:V, 7n8o:v, 7rcv:V, 7rcv:v, 8tow:V, 8tow:v
42 1gks:A 78 75 0.2442 0.2692 0.2800 0.046
43 7qhm:C 233 80 0.2558 0.0944 0.2750 0.064 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
44 1b7v:A 71 75 0.2791 0.3380 0.3200 0.10 1c75:A, 1k3g:A, 1k3h:A, 1n9c:A
45 4yuu:V1 129 16 0.0930 0.0620 0.5000 0.19 4yuu:v1, 4yuu:V2, 4yuu:v2
46 4j20:A 88 86 0.2674 0.2614 0.2674 0.24 4j20:B
47 9av7:A 304 28 0.1512 0.0428 0.4643 0.25
48 3a0b:V 137 18 0.1047 0.0657 0.5000 0.33 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
49 2aiu:A 104 98 0.3372 0.2788 0.2959 0.34
50 1kb0:A 670 27 0.1279 0.0164 0.4074 0.46
51 6jlu:V 137 16 0.0930 0.0584 0.5000 0.48 8iwh:V, 8iwh:v, 6j3y:V, 6j3y:v, 6j3z:V, 6j3z:v, 6j40:V, 6j40:v, 8j5k:V, 8j5k:v, 6jlu:v, 7vd5:V, 7vd5:v
52 6btm:E 161 81 0.2791 0.1491 0.2963 0.66
53 1akk:A 104 98 0.3256 0.2692 0.2857 0.79 2b4z:A, 5c0z:A, 5c0z:D, 5c0z:B, 5c0z:C, 5c9m:A, 5c9m:D, 5c9m:B, 5c9m:C, 1crc:A, 1crc:B, 5df5:A, 5df5:B, 5df5:C, 5df5:D, 8dvx:A, 8dvx:D, 8dvx:B, 8dvx:C, 8dzl:A, 8dzl:B, 8dzl:C, 8dzl:D, 6ff5:A, 1fi7:A, 1fi9:A, 2frc:A, 1giw:A, 2giw:A, 1hrc:A, 1i5t:A, 5iy5:1, 5iy5:2, 3j2t:H, 3j2t:I, 3j2t:J, 3j2t:K, 3j2t:L, 3j2t:M, 3j2t:N, 3jbt:B, 3jbt:D, 3jbt:F, 3jbt:H, 3jbt:J, 3jbt:L, 3jbt:N, 5juy:H, 5juy:I, 5juy:J, 5juy:K, 5juy:L, 5juy:M, 5juy:N, 6k9i:A, 6k9j:A, 1lc1:A, 1lc2:A, 7ljx:A, 7ljx:B, 1m60:A, 6n1o:A, 6n1o:B, 6n1o:C, 6n1o:D, 2n3b:A, 3nbs:A, 3nbs:B, 3nbs:C, 3nbs:D, 3nbt:A, 3nbt:E, 3nbt:B, 3nbt:C, 3nbt:D, 3nbt:F, 4nfg:B, 3o1y:A, 3o1y:B, 3o1y:C, 3o20:A, 3o20:B, 3o20:C, 1ocd:A, 2pcb:B, 4rsz:A, 4rsz:B, 4rsz:C, 4rsz:D, 4rsz:E, 4rsz:F, 6suv:AaA, 6suv:BaB, 6suv:CaC, 6suv:DaD, 6suv:EaE, 6suv:FaF, 6suv:GaG, 6suv:HaH, 1u75:B, 3wc8:A, 1wej:F, 3wui:A, 5wve:B, 5wve:D, 5wve:F, 5wve:H, 5wve:J, 5wve:L, 5wve:N, 2ybb:Y, 5zkv:A
54 8xr6:V 137 16 0.0814 0.0511 0.4375 0.89 8wb4:V, 8wb4:v, 8xr6:v
55 7y5e:VL 134 16 0.0930 0.0597 0.5000 1.3 7y5e:V6, 7y5e:v6, 7y5e:vL, 7y7a:V9, 7y7a:v9, 7y7a:VE, 7y7a:vE, 7y7a:VO, 7y7a:vO, 7y7a:VZ, 7y7a:vZ, 7y7a:Vm, 7y7a:vm
56 2l4d:A 106 17 0.0930 0.0755 0.4706 1.8
57 7cr6:C 325 46 0.1512 0.0400 0.2826 2.0 7cr6:B, 7cr6:D, 7cr6:A, 7cr8:J, 7cr8:K, 7cr8:L, 7cr8:I, 7cr8:R, 7cr8:S, 7cr8:T, 7cr8:Q, 7cr8:b, 7cr8:c, 7cr8:d, 7cr8:a, 7cr8:j, 7cr8:k, 7cr8:l, 7cr8:i, 7cr8:r, 7cr8:s, 7cr8:t, 7cr8:q, 7cr8:B, 7cr8:C, 7cr8:D, 7cr8:A
58 3ndr:A 247 28 0.1395 0.0486 0.4286 2.4 3ndr:B, 3ndr:C, 3ndr:D, 3nug:A, 3nug:B, 3nug:C, 3nug:D, 3rwb:A, 3rwb:B, 3rwb:C, 3rwb:D
59 8cmo:9 184 24 0.1395 0.0652 0.5000 2.4
60 8wql:VD 135 16 0.1047 0.0667 0.5625 2.5 1f1c:A, 1f1c:B, 8wql:VE, 8wql:V1, 8wql:v1, 8wql:vD, 8wql:vE
61 2xts:D 204 17 0.1047 0.0441 0.5294 2.9 2xts:B
62 2yev:B 319 22 0.0930 0.0251 0.3636 2.9 2yev:E
63 7u2v:A 114 19 0.0930 0.0702 0.4211 3.2 7u2v:B
64 1ccr:A 111 93 0.2791 0.2162 0.2581 3.7
65 7txe:A 131 19 0.0930 0.0611 0.4211 4.0 7txe:B
66 7w2j:C 418 92 0.3488 0.0718 0.3261 4.5 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
67 5dfs:A 104 98 0.2907 0.2404 0.2551 4.9 5dfs:B, 6duj:A, 6duj:C, 6ecj:A, 6ecj:B, 6ecj:C, 6ecj:D, 6ecj:E, 6ecj:F, 6ecj:G, 6ecj:H, 5exq:A, 5exq:B, 1j3s:A, 2n3y:A, 2n9i:A, 2n9j:A, 3nwv:A, 3nwv:B, 3nwv:C, 3nwv:D, 5o10:A, 5o10:B, 5ty3:A, 5ty3:B, 6xnk:A, 6xnk:C, 6xnk:E, 6xnk:G, 3zcf:A, 3zcf:B, 3zcf:C, 3zcf:D, 3zoo:A, 3zoo:B, 3zoo:C, 3zoo:D
68 8gy2:A 723 29 0.1047 0.0124 0.3103 5.1
69 2c8s:A 149 91 0.2558 0.1477 0.2418 5.5
70 2yww:B 142 41 0.1628 0.0986 0.3415 5.9 2yww:A
71 5lo9:A 471 84 0.2674 0.0488 0.2738 6.6 5lo9:B
72 7moq:C 4159 75 0.2442 0.0050 0.2800 6.7 6zyy:C
73 4jc0:A 424 21 0.1047 0.0212 0.4286 7.8 4jc0:B
74 8gy2:B 433 87 0.2326 0.0462 0.2299 7.9
75 8bwy:C 4264 75 0.2442 0.0049 0.2800 8.2
76 8bx8:A 4453 75 0.2442 0.0047 0.2800 8.5 7k58:A, 7k5b:A, 7kek:A
77 6zyw:C 4433 75 0.2442 0.0047 0.2800 8.8
78 6kls:C 236 14 0.0814 0.0297 0.5000 9.0 6kls:F, 6klv:C, 6klv:F
79 1cyc:A 103 98 0.2907 0.2427 0.2551 9.2 1cyc:B, 3cyt:O, 3cyt:I, 5cyt:R, 1i54:A, 1i54:B, 1i55:A, 1i55:B, 1lfm:A, 1lfm:B
80 6p73:A 439 39 0.1047 0.0205 0.2308 9.7 6p73:B, 3ubr:A, 3ubr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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