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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADPEVCCFITKILCAHGGRMALDALLQEIALSEPQLCEVLQVAGPDRFVVLEITRSVVATTRARVCRRKYCQRPCDNLHL
CKLNLLGRCNYSNLCKYSHEVLSEENFKVLKNHELSGLNKEELAVLLLQSDPFFMPEICKSYKGEGRQQICNQCSRLHIC
DHFTRGNCRFPNCLRSHNLMDRKVLAIMREHGLNPDVVQNIQDICNSKHMQK

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6uej:A 212 212 1.0000 1.0000 1.0000 9.29e-158 6uei:A
2 3u9g:A 217 217 0.8113 0.7926 0.7926 6.66e-125 6l1w:A
3 2yfn:A 719 49 0.0849 0.0250 0.3673 0.025 2yfo:A
4 6pbv:D 223 96 0.1132 0.1076 0.2500 0.052 6pbv:B, 6pbw:D
5 8a22:Xd 413 55 0.0802 0.0412 0.3091 1.2 8apn:Xd, 8apo:Xd
6 7dco:M 176 33 0.0613 0.0739 0.3939 1.3 5gm6:a
7 8iuf:A9 484 33 0.0519 0.0227 0.3333 3.6 8j9h:A9, 8j9i:A9, 8j9j:A9
8 3nmn:D 276 35 0.0613 0.0471 0.3714 4.9 3kdj:B, 3nmn:B
9 4ii1:B 139 84 0.0991 0.1511 0.2500 8.5 4ii1:A, 4ii1:C, 4ii1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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