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BioLiP
>protein
ADKTIFNDHLNTNPKTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNITG

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vb9:c 68 68 1.0000 1.0000 1.0000 9.00e-46 7f0l:X, 7pil:X, 7pqd:X, 7pqd:x, 7va9:C, 7va9:c, 7vb9:C, 7vnm:X, 7vny:X, 7vor:X, 7vor:x, 7vot:X, 7vot:x, 7vy2:X, 7vy2:x, 7vy3:X
2 1ylh:A 524 62 0.2794 0.0363 0.3065 0.028
3 7yml:X 65 59 0.3088 0.3231 0.3559 0.15 8b64:X
4 5eiy:B 658 68 0.3088 0.0319 0.3088 0.25 5ej1:B, 5ejz:B, 4hg6:B, 4p00:B, 4p02:B
5 1os1:A 537 61 0.2353 0.0298 0.2623 4.2 1aq2:A, 6asi:A, 6asm:A, 6asn:A, 6at2:A, 6at3:A, 6at3:B, 6at4:A, 6at4:B, 1ayl:A, 6com:A, 6crt:A, 1k3c:A, 1k3d:A, 2olq:A, 2olr:A, 2pxz:X, 2py7:X, 6v2l:A, 6v2m:A, 6v2n:A
6 8yfq:R 746 18 0.1029 0.0094 0.3889 4.3
7 1l5j:A 862 28 0.1618 0.0128 0.3929 7.8 1l5j:B
8 1xl8:B 600 27 0.1471 0.0167 0.3704 9.2 1xl8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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