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BioLiP
>protein
ADGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADGSYGGERKAMMTNAVKKYSDEELKALADYMSKL

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dvh:A 79 79 1.0000 1.0000 1.0000 4.12e-51 2dvh:A, 1dwl:B, 1e08:E
2 1c53:A 79 79 0.7975 0.7975 0.7975 3.95e-41
3 8yts:A 83 75 0.3544 0.3373 0.3733 9.47e-08 8yts:B
4 2zzs:A 81 70 0.2911 0.2840 0.3286 2.22e-05 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
5 8smr:K 181 69 0.3165 0.1381 0.3623 1.46e-04 6q2u:A, 8smr:N, 8snh:K, 8snh:N
6 8smr:K 181 90 0.3038 0.1326 0.2667 0.015 6q2u:A, 8smr:N, 8snh:K, 8snh:N
7 5n1t:B 75 76 0.2405 0.2533 0.2500 2.68e-04
8 1etp:A 190 74 0.3291 0.1368 0.3514 3.21e-04 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
9 1etp:A 190 72 0.2278 0.0947 0.2500 0.018 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
10 3x15:A 87 83 0.3544 0.3218 0.3373 0.001 3x15:G, 3x15:D, 3x15:J, 2zxy:A
11 7b21:AAA 92 46 0.1772 0.1522 0.3043 0.006
12 8uf3:A 187 76 0.2658 0.1123 0.2763 0.010 8uf3:B
13 8uf3:A 187 69 0.2152 0.0909 0.2464 0.71 8uf3:B
14 1c52:A 131 40 0.2152 0.1298 0.4250 0.013 1dt1:A, 1foc:A, 1foc:B, 2fwl:A, 1qyz:A, 1r0q:A, 3vnw:A
15 1h1o:A 172 71 0.2278 0.1047 0.2535 0.077 1h1o:B
16 1h1o:A 172 69 0.2278 0.1047 0.2609 0.44 1h1o:B
17 2dge:A 102 90 0.3165 0.2451 0.2778 0.083 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
18 5mxy:A 83 89 0.3291 0.3133 0.2921 0.16 5mxz:A
19 1fcd:C 174 74 0.2532 0.1149 0.2703 0.21 1fcd:D
20 1w2l:A 97 48 0.2025 0.1649 0.3333 0.27
21 3vrd:A 174 74 0.2532 0.1149 0.2703 0.35
22 5lo9:A 471 69 0.2532 0.0425 0.2899 0.39 5lo9:B
23 4v2k:A 235 18 0.1519 0.0511 0.6667 0.45 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
24 1cg0:A 431 63 0.1772 0.0325 0.2222 0.46 1cg1:A, 1cg3:A, 1cg4:A, 1ch8:A, 1cib:A, 2gcq:A, 1gim:A, 1gin:A, 1hon:A, 1hoo:A, 1juy:A, 1kjx:A, 1kkb:A, 1kkf:A, 1ksz:A, 1nht:A, 1qf4:A, 1qf5:A, 1son:A, 1soo:A
25 2qjj:A 402 27 0.1899 0.0373 0.5556 1.0 4k1w:A, 4k1w:B, 4k1w:C, 4k1w:D, 4k8g:A, 2qjj:B, 2qjj:C, 2qjj:D, 2qjm:A, 2qjm:B, 2qjm:C, 2qjm:D, 2qjn:A, 2qjn:B, 2qjn:C, 2qjn:D
26 7vzg:C 193 18 0.1139 0.0466 0.5000 1.9 7vzr:C
27 2ct8:A 465 68 0.2278 0.0387 0.2647 3.1 2csx:A, 2csx:B, 2ct8:B
28 1fj0:A 114 15 0.1013 0.0702 0.5333 4.7 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
29 5z25:A 96 19 0.1266 0.1042 0.5263 5.9
30 1su0:B 136 25 0.1646 0.0956 0.5200 6.8
31 6bn5:B 448 22 0.1266 0.0223 0.4545 7.4
32 8snh:G 304 26 0.1139 0.0296 0.3462 7.9
33 4g68:A 392 29 0.1646 0.0332 0.4483 8.6 4g68:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417