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BioLiP
>protein
ADETLAEFHVEMGGCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPTCDTCHD
DGRTAK

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2k3v:A 86 86 1.0000 1.0000 1.0000 4.13e-59
2 6hr0:A 90 84 0.7674 0.7333 0.7857 1.72e-46
3 6ee7:A 91 85 0.6860 0.6484 0.6941 4.46e-41 1m1p:A, 1m1p:B, 1m1p:C, 1m1p:D, 1m1p:E, 1m1p:F, 1m1q:A, 1m1r:A
4 1d4c:A 570 94 0.4419 0.0667 0.4043 1.12e-10 1d4c:C, 1d4c:B, 1d4c:D, 1d4d:A, 1d4e:A
5 2b7r:A 568 88 0.4302 0.0651 0.4205 4.57e-10 2b7s:A, 1e39:A, 1jrx:A, 1jrx:B, 1jry:A, 1jry:B, 1jrz:A, 1jrz:B, 1kss:A, 1ksu:A, 1ksu:B, 1lj1:A, 1lj1:B, 1m64:A, 1m64:B, 1p2e:A, 1p2h:A, 1q9i:A, 1qjd:A, 1y0p:A
6 1qo8:A 564 82 0.3605 0.0550 0.3780 6.92e-08 1qo8:D
7 6r2q:A 265 87 0.3023 0.0981 0.2989 0.024
8 3vth:A 753 85 0.2791 0.0319 0.2824 0.052 3vth:B, 3vti:A, 3vti:B
9 1gws:A 503 80 0.2791 0.0477 0.3000 0.17 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
10 1gws:A 503 54 0.2326 0.0398 0.3704 6.5 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
11 3ux8:A 564 33 0.1512 0.0230 0.3939 0.24
12 4n4j:A 497 71 0.2674 0.0463 0.3239 0.32 4n4k:A, 4n4l:A, 4n4m:A, 4rwm:A
13 2r6f:A 899 36 0.1512 0.0145 0.3611 0.64
14 3uwx:A 945 36 0.1512 0.0138 0.3611 0.66
15 2r6f:B 879 36 0.1512 0.0148 0.3611 0.70
16 7o7g:A 627 38 0.1860 0.0255 0.4211 1.0 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
17 6btm:A 221 38 0.1628 0.0633 0.3684 2.2
18 2vf7:B 813 34 0.1395 0.0148 0.3529 2.7 2vf8:A
19 1qn0:A 112 17 0.1279 0.0982 0.6471 2.8 1qn1:A, 1wad:A
20 2p1r:A 290 26 0.1395 0.0414 0.4615 3.1 2p1r:B, 2p1r:C, 2p1r:D
21 3ov0:A 318 120 0.3256 0.0881 0.2333 3.4 3oue:A, 3ouq:A, 1rwj:A
22 6jzb:A 251 61 0.2093 0.0717 0.2951 3.8
23 7z51:A 494 24 0.1163 0.0202 0.4167 3.9 7z51:B, 7z51:C
24 1sp3:A 436 62 0.1860 0.0367 0.2581 4.9
25 6m0q:A 504 87 0.2791 0.0476 0.2759 5.7 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
26 5tuo:F 199 36 0.1279 0.0553 0.3056 7.5 5tt8:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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