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BioLiP
>protein
ADDIVLKAKNGDVKLPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHKK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4haj:A 71 71 0.9718 0.9718 0.9718 1.47e-43 4hb6:A, 4hb8:A, 4hbf:A, 4hc3:A, 4hdl:A, 2ldo:A, 2lzz:A, 2mz9:A, 2n91:A, 1os6:A, 3sel:X, 3sj0:X, 3sj1:X, 3sj4:X
2 3bxu:A 71 71 0.7606 0.7606 0.7606 2.17e-33 3bxu:B
3 3h33:A 72 69 0.6197 0.6111 0.6377 6.91e-27
4 3h34:A 70 69 0.5493 0.5571 0.5652 1.07e-20
5 3h4n:B 69 68 0.5775 0.5942 0.6029 4.05e-19 3h4n:A
6 1ehj:A 68 71 0.4507 0.4706 0.4507 4.68e-10 1f22:A, 1hh5:A, 1kwj:A, 1l3o:A, 1lm2:A, 1new:A
7 3cao:A 103 30 0.2254 0.1553 0.5333 4.60e-04 3car:A
8 2bq4:B 115 93 0.4366 0.2696 0.3333 5.69e-04 2bq4:A
9 2e84:A 513 80 0.3662 0.0507 0.3250 0.004
10 4lmh:D 695 55 0.2535 0.0259 0.3273 0.071 4lmh:A, 4lmh:B, 4lmh:C
11 1aqe:A 110 90 0.3521 0.2273 0.2778 0.22 1czj:A
12 4fvk:A 367 17 0.1408 0.0272 0.5882 0.76 4fvk:B, 4gdi:A, 4gdi:B, 4gdi:C, 4gdi:D, 4gdi:E, 4gdi:F, 4gdj:A, 4gez:A, 4gez:B, 4gez:C, 4gez:D, 4gez:E, 4gez:F, 4gez:G, 4gez:H, 4gez:I, 4gez:J, 4gez:K, 4gez:L
13 1z1n:X 516 56 0.2817 0.0388 0.3571 0.96
14 4gdj:B 321 17 0.1408 0.0312 0.5882 1.0 4gdj:C, 4gdj:D
15 1gws:A 503 52 0.2676 0.0378 0.3654 1.1 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
16 1gws:A 503 74 0.2958 0.0417 0.2838 3.4 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
17 5mog:B 472 29 0.1690 0.0254 0.4138 1.2 5mog:A, 5mog:C, 5mog:D, 5mog:E
18 1zzh:B 308 31 0.1268 0.0292 0.2903 1.3 1zzh:A, 1zzh:C, 1zzh:D
19 1duw:A 289 51 0.2535 0.0623 0.3529 2.5
20 2cy3:A 118 31 0.1972 0.1186 0.4516 2.8 1w7o:A
21 2c1v:A 335 22 0.1127 0.0239 0.3636 3.0 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
22 8gy2:B 433 35 0.1690 0.0277 0.3429 3.5
23 8hmf:A 533 25 0.0986 0.0131 0.2800 5.6 8hme:A
24 6cwy:D 487 14 0.1268 0.0185 0.6429 5.7
25 3kyd:B 477 14 0.1268 0.0189 0.6429 5.9
26 4qo5:A 521 26 0.1268 0.0173 0.3462 6.5
27 2ccy:A 127 15 0.1408 0.0787 0.6667 6.9 2ccy:B
28 3kyc:B 548 14 0.1268 0.0164 0.6429 7.2 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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