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BioLiP
>protein
ADCAKGKIEFSKYNEDNTFTVKVSGREYWTNRWNLQPLLQSAQLTGMTVTIISNTCSSGSGFAEVQFN

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2bos:A 68 68 1.0000 1.0000 1.0000 4.74e-47 2bos:B, 2bos:C, 2bos:E
2 7d6q:C 70 68 0.8971 0.8714 0.8971 2.95e-42 7d6q:B, 7d6q:D, 7d6q:F, 7d6r:D, 7d6r:B, 7d6r:C, 7d6r:F, 2ga4:B, 2ga4:C, 2ga4:D, 2ga4:F, 4m1u:F, 4m1u:B, 4m1u:C, 4m1u:D, 3mxg:F, 3mxg:J, 3mxg:C, 3mxg:D, 1r4p:B, 1r4p:C, 1r4p:D, 1r4p:E, 1r4p:F, 7ujj:B, 7ujj:C, 7ujj:D, 7ujj:F, 7vhc:D, 7vhc:B, 7vhc:C, 7vhc:F, 7vhd:D, 7vhd:B, 7vhd:C, 7vhd:F, 7vhe:B, 7vhe:C, 7vhe:D, 7vhe:F, 7vhf:B, 7vhf:C, 7vhf:D, 7vhf:F
3 1bos:A 69 67 0.6324 0.6232 0.6418 9.94e-29 1bos:B, 1bos:C, 1bos:D, 1bos:E, 1bos:F, 1bos:G, 1bos:H, 1bos:I, 1bos:J, 1bos:K, 1bos:L, 1bos:M, 1bos:N, 1bos:O, 1bos:P, 1bos:Q, 1bos:R, 1bos:S, 1bos:T, 1c4q:A, 1c4q:B, 1c4q:C, 1c4q:D, 1c4q:E, 2c5c:A, 2c5c:F, 2c5c:B, 2c5c:C, 2c5c:D, 2c5c:E, 2c5c:G, 2c5c:H, 2c5c:I, 2c5c:J, 1cqf:A, 1cqf:B, 1cqf:C, 1cqf:D, 1cqf:E, 1d1i:A, 1d1i:B, 1d1i:C, 1d1i:D, 1d1i:E, 1d1k:A, 1d1k:B, 1d1k:C, 1d1k:D, 1d1k:E, 1qnu:A, 1qnu:B, 1qnu:C, 1qnu:D, 1qnu:E
4 3d43:B 310 35 0.2059 0.0452 0.4000 4.1 3d43:A, 1ea7:A, 2ixt:A, 2ixt:B
5 8w0a:C 636 29 0.1618 0.0173 0.3793 4.2 8w0a:A
6 9asj:A 741 29 0.1618 0.0148 0.3793 4.2 9asj:B, 9bp9:A, 9bp9:C, 9bpa:A, 9bpa:C, 9bpa:E, 9bpa:G
7 9bha:A 793 29 0.1618 0.0139 0.3793 4.2 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A
8 7ooc:H 128 36 0.1618 0.0859 0.3056 5.1 7p6z:H, 7pah:H, 7pai:H, 7paj:H, 7pak:H, 7pal:H, 7pam:H, 7pan:H, 7pao:H, 7paq:H, 7par:H, 7pas:H, 7ph9:H, 7pha:H, 7phb:H, 7phc:H, 7pi8:H, 7pi9:H, 7pia:H, 7pib:H, 7pic:H, 7pio:H, 7pip:H, 7piq:H, 7pir:H, 7pis:H, 7pit:H
9 3ob8:A 1024 38 0.2206 0.0146 0.3947 5.1 3ob8:B, 3ob8:D, 3ob8:C, 3oba:A, 3oba:C, 3oba:D, 3oba:B
10 8cup:B 360 21 0.1324 0.0250 0.4286 6.3 8cup:A, 8cuq:B, 8cuq:A, 8fqm:A, 8fqm:B, 8fqm:C, 8fqm:D, 8fqn:A, 8fqo:B, 8fqo:A, 8fqp:B, 8fqp:A, 8fqq:A, 8fqq:B, 8fqr:B, 8fqs:B, 8fqu:B, 8fqu:A, 8fqw:B, 8fqw:A, 6pwl:A, 6pwl:B, 6pwl:C, 6pwl:D, 6pwm:A, 6pwm:B, 6pwm:C, 6pwm:D, 6tzf:A, 6tzf:B, 6tzf:C, 6tzf:D, 6tzg:A, 6tzg:B, 6tzg:C, 6tzg:D, 6tzh:A, 6tzh:B, 6tzh:C, 6tzh:D, 6tzi:A, 6tzi:B, 6tzi:C, 6tzi:D, 6tzj:A, 6tzj:B, 6tzj:C, 6tzj:D, 4u0x:B, 4u0x:A, 4u0x:C, 4u0x:D, 5w12:A, 5w12:B, 5w12:C, 5w12:D, 5w13:A, 5w13:B, 5w13:C, 5w13:D, 5w14:A, 5w14:B, 5w14:C, 5w14:D, 5wac:A, 5wac:B, 5wac:C, 5wac:D, 5wad:A, 5wad:B, 5wad:C, 5wad:D, 5wae:A, 5wae:B, 5wae:C, 5wae:D, 5waf:A, 5waf:B, 5waf:C, 5waf:D, 5wag:B, 5wag:A, 5wag:C, 5wag:D, 6wif:A, 6wif:B, 6wif:C, 6wif:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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