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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADCAKGKIEFSKYNEDDTFTVKVDGKEYWTSRWNLQPLLLSAQLTGMTVTIKSSTCESGSGFAEVQFNND

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d6q:C 70 70 0.9857 0.9857 0.9857 2.14e-47 7d6q:B, 7d6q:D, 7d6q:F, 7d6r:D, 7d6r:B, 7d6r:C, 7d6r:F, 2ga4:B, 2ga4:C, 2ga4:D, 2ga4:F, 4m1u:F, 4m1u:B, 4m1u:C, 4m1u:D, 3mxg:F, 3mxg:J, 3mxg:C, 3mxg:D, 1r4p:B, 1r4p:C, 1r4p:D, 1r4p:E, 1r4p:F, 7ujj:B, 7ujj:C, 7ujj:D, 7ujj:F, 7vhc:D, 7vhc:B, 7vhc:C, 7vhc:F, 7vhd:D, 7vhd:B, 7vhd:C, 7vhd:F, 7vhe:B, 7vhe:C, 7vhe:D, 7vhe:F, 7vhf:B, 7vhf:C, 7vhf:D, 7vhf:F
2 2bos:A 68 68 0.8571 0.8824 0.8824 4.38e-41 2bos:B, 2bos:C, 2bos:E
3 1bos:A 69 66 0.6429 0.6522 0.6818 3.63e-30 1bos:B, 1bos:C, 1bos:D, 1bos:E, 1bos:F, 1bos:G, 1bos:H, 1bos:I, 1bos:J, 1bos:K, 1bos:L, 1bos:M, 1bos:N, 1bos:O, 1bos:P, 1bos:Q, 1bos:R, 1bos:S, 1bos:T, 1c4q:A, 1c4q:B, 1c4q:C, 1c4q:D, 1c4q:E, 2c5c:A, 2c5c:F, 2c5c:B, 2c5c:C, 2c5c:D, 2c5c:E, 2c5c:G, 2c5c:H, 2c5c:I, 2c5c:J, 1cqf:A, 1cqf:B, 1cqf:C, 1cqf:D, 1cqf:E, 1d1i:A, 1d1i:B, 1d1i:C, 1d1i:D, 1d1i:E, 1d1k:A, 1d1k:B, 1d1k:C, 1d1k:D, 1d1k:E, 1qnu:A, 1qnu:B, 1qnu:C, 1qnu:D, 1qnu:E
4 7ybu:A 670 55 0.3143 0.0328 0.4000 0.002 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
5 3gtt:A 153 26 0.1286 0.0588 0.3462 1.5 3gtt:B, 3gtt:C, 3gtt:D, 3gtt:E, 3gtt:F, 3ltv:A, 3ltv:B, 3ltv:C, 3ltv:D, 3ltv:E, 3ltv:F
6 1lrw:A 600 34 0.1571 0.0183 0.3235 3.8 1lrw:C
7 3ob8:A 1024 38 0.2143 0.0146 0.3947 3.9 3ob8:B, 3ob8:D, 3ob8:C, 3oba:A, 3oba:C, 3oba:D, 3oba:B
8 6omp:A 356 31 0.1714 0.0337 0.3871 8.2 6omp:B, 6omq:A, 6omq:B, 6omr:A, 6omr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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