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BioLiP
>protein
AAPLVAETDANAKSLGYVADTTKADKTKYPKHTKDQSCSTCALYQGKTAPQGACPLFAGKEVVAKGWCSAWAKKA

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hlq:A 75 75 1.0000 1.0000 1.0000 1.26e-49 1hlq:B, 1hlq:C
2 1hpi:A 71 71 0.3467 0.3662 0.3662 1.11e-09
3 1js2:A 89 78 0.3467 0.2921 0.3333 3.44e-06 3a38:A, 3a39:A, 6aiq:A, 6air:A, 2ams:A, 1b0y:A, 7c52:b, 1cku:A, 1cku:B, 5d8v:A, 1eyt:A, 2fla:A, 1hip:A, 1hrq:A, 1hrr:A, 1iua:A, 1js2:B, 1js2:C, 1js2:D, 1neh:A, 1noe:A, 7vos:A, 5wqq:A, 5wqr:A
4 3hip:A 82 76 0.2800 0.2561 0.2763 2.01e-04 3hip:B, 3hip:C
5 1pih:A 73 52 0.2400 0.2466 0.3462 0.023 2hip:A, 2hip:B, 1pij:A
6 7r5j:D4 1312 44 0.2267 0.0130 0.3864 0.84 7r5j:D0, 7r5j:D1, 7r5j:D2, 7r5j:D3, 7r5j:D5, 7r5k:D4, 7r5k:D0, 7r5k:D1, 7r5k:D2, 7r5k:D3, 7r5k:D5
7 7aml:A 596 43 0.1467 0.0185 0.2558 0.85 7amk:A, 7amk:B, 7aml:D
8 3h31:A 74 78 0.2933 0.2973 0.2821 1.0
9 7yhn:A 415 39 0.1600 0.0289 0.3077 2.2 8otz:KO, 7rro:KO
10 6ya7:A 350 31 0.1467 0.0314 0.3548 3.2 6ya6:A, 6ya8:A
11 6k5z:B 314 18 0.1067 0.0255 0.4444 5.1 6k5z:A, 6k9z:A, 6k9z:B
12 3va4:B 108 23 0.1200 0.0833 0.3913 7.5
13 8qjd:A 1037 34 0.1733 0.0125 0.3824 9.6 8qjd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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