Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAGSYPFVPPSWAPSVFVPLTGLVLPAIAMATLFVYIEKDN

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dz7:I 42 40 0.9024 0.8810 0.9250 3.24e-20 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
2 6sl5:I 39 39 0.6585 0.6923 0.6923 7.19e-14
3 8htu:I 34 31 0.5122 0.6176 0.6774 1.84e-10 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
4 7yca:I 35 31 0.5122 0.6000 0.6774 5.03e-10
5 7qco:I 39 31 0.4634 0.4872 0.6129 5.30e-09 7qco:P, 7qco:p, 7qco:i
6 7wfd:AI 33 27 0.4634 0.5758 0.7037 1.06e-08 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
7 6igz:I 32 29 0.4878 0.6250 0.6897 1.24e-08
8 7a4p:I 35 31 0.4390 0.5143 0.5806 1.27e-08 6zzx:I, 6zzy:I
9 8bcv:I 33 28 0.4390 0.5455 0.6429 2.81e-08 8bcw:I, 7ew6:I, 7ewk:I, 7f9o:I, 7f9o:l, 5zji:I
10 7dr0:I 30 28 0.4634 0.6333 0.6786 5.94e-08 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
11 6ly5:i 33 27 0.4146 0.5152 0.6296 2.45e-07 7dkz:I, 5l8r:I, 3lw5:I, 2o01:I, 2wsc:I, 2wse:I, 2wsf:I, 4xk8:i, 6yac:I, 6yez:I, 6zoo:I, 6zxs:I
12 7y5e:IN 31 29 0.3902 0.5161 0.5517 1.85e-06 7y5e:I2, 7y7a:I7, 7y7a:Io
13 6l4u:I 35 31 0.3415 0.4000 0.4516 1.88e-06
14 8wm6:I 34 31 0.3415 0.4118 0.4516 5.15e-06 8wmj:I, 8wmv:I, 8wmw:I
15 6kif:I 38 30 0.3902 0.4211 0.5333 6.01e-06 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
16 8wey:I 32 29 0.4146 0.5312 0.5862 6.18e-05 7blz:I, 5zgb:I, 5zgh:I
17 7y7b:I 33 30 0.3171 0.3939 0.4333 7.81e-05 7y8a:I
18 6vpv:I 38 30 0.3415 0.3684 0.4667 1.81e-04 6vpv:i, 6vpv:7
19 6kmw:aI 38 30 0.3171 0.3421 0.4333 4.40e-04 6kmw:cI, 6kmw:bI
20 8am5:i 40 39 0.3415 0.3500 0.3590 0.001 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
21 6k61:I 34 31 0.3171 0.3824 0.4194 0.002 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
22 4fe1:I 38 38 0.3415 0.3684 0.3684 0.010 7fix:I1, 7fix:I2, 7fix:I3, 1jb0:I, 6k33:aI, 6k33:bI, 6k33:cI, 6lu1:I, 7m75:I, 7m76:I, 7m78:I, 3pcq:I, 6pfy:I, 6pfy:R, 6pfy:e, 6pgk:I, 6pgk:R, 6pgk:e, 6tra:I, 6trc:I, 6trc:7, 6trc:i, 6trd:I, 6trd:7, 6trd:i, 5zf0:I1, 5zf0:I2, 5zf0:I3, 5zf0:I4, 5zf0:I5, 5zf0:I6
23 7lx0:R 42 30 0.2927 0.2857 0.4000 0.027 7lx0:I, 7lx0:i, 6pnj:I, 6pnj:R, 6pnj:i
24 8jjr:i 120 22 0.2927 0.1000 0.5455 0.072
25 8jze:i 119 22 0.2927 0.1008 0.5455 0.17 8jzf:i
26 6kmx:aI 41 29 0.2439 0.2439 0.3448 0.27 6kmx:cI, 6kmx:bI
27 7s3d:I 42 31 0.2195 0.2143 0.2903 0.93 7s3d:i, 7s3d:R
28 8eqm:D 338 18 0.2683 0.0325 0.6111 1.8 8eqm:d, 7sa3:D
29 6fvt:M 421 41 0.3415 0.0333 0.3415 2.7 6ef0:M, 6ef1:M, 6ef2:M, 6fvu:M, 6fvv:M, 6fvw:M, 6fvx:M, 6fvy:M, 7qo4:M, 7qo5:M, 7qo6:M
30 8h6l:2D 236 22 0.2195 0.0381 0.4091 3.7 8h6k:2D, 8q7n:7, 8qoz:7, 8qpa:7, 8qpb:7, 8qpe:7, 8qzs:7, 8r09:7, 8r0b:7, 8rm5:7
31 7nl1:D 400 23 0.2683 0.0275 0.4783 5.6 8bis:C, 8bis:A, 8biu:G, 8biu:A, 8biv:A, 8biv:E, 8biw:E, 8biw:A, 8bix:C, 8bix:A, 8biz:E, 8biz:A, 7nl1:A, 7nl1:B, 7nl1:C, 7nl1:E, 7nl1:F, 7nl1:G, 7nl1:H
32 7coy:aI 30 26 0.2195 0.3000 0.3462 7.4 7coy:bI, 7coy:cI
33 1kb0:A 670 23 0.2927 0.0179 0.5217 8.3
34 7f4v:aI 31 23 0.2683 0.3548 0.4783 8.4 7f4v:bI, 7f4v:cI
35 7tl7:A 531 27 0.2439 0.0188 0.3704 9.7 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218