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BioLiP
>protein
AAGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fqp:A 67 61 0.9683 0.9104 1.0000 1.52e-41 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
2 4xrm:B 64 61 0.4762 0.4688 0.4918 1.02e-17 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
3 1lfu:P 82 57 0.3333 0.2561 0.3684 3.79e-10 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4egc:A 539 48 0.3810 0.0445 0.5000 1.50e-07
5 1mnm:C 77 51 0.2857 0.2338 0.3529 2.70e-04 1mnm:D
6 1akh:B 78 49 0.2857 0.2308 0.3673 2.87e-04 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
7 2d5v:A 135 35 0.2540 0.1185 0.4571 0.012 2d5v:B, 8t0f:A, 8t11:A
8 2cw9:A 182 40 0.2698 0.0934 0.4250 0.11
9 5zjr:A 64 35 0.2222 0.2188 0.4000 0.33 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
10 5eea:G 63 41 0.2063 0.2063 0.3171 0.53 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
11 3q9n:A 138 58 0.2381 0.1087 0.2586 1.3 3q9n:B, 3q9u:A, 3q9u:B
12 1le8:A 53 27 0.1746 0.2075 0.4074 1.5 1akh:A, 1yrn:A
13 4n83:A 285 29 0.1429 0.0316 0.3103 1.9 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
14 2d5a:A 142 46 0.1905 0.0845 0.2609 3.0 2e6u:X
15 3lrp:A 181 27 0.1429 0.0497 0.3333 3.1
16 6pd2:C 616 23 0.1429 0.0146 0.3913 4.3 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
17 1fjl:A 65 32 0.1905 0.1846 0.3750 4.5 1fjl:B, 1fjl:C
18 1zq3:P 68 24 0.2063 0.1912 0.5417 4.8
19 7d56:C 640 20 0.1270 0.0125 0.4000 5.6 7d56:B, 7d56:A, 7d5r:A, 7d5r:B, 7d8n:A, 7d8n:B, 7dan:C, 7dan:B, 7dan:A
20 4j19:A 77 62 0.2381 0.1948 0.2419 6.9 4j19:B
21 4rh7:A 3005 46 0.2381 0.0050 0.3261 7.3
22 6sc2:B 3930 23 0.1587 0.0025 0.4348 7.8 6rla:A, 6rla:B, 6sc2:A
23 5bp4:R 637 14 0.1270 0.0126 0.5714 7.9 5bp4:O, 5bp4:Q
24 5bp4:L 897 14 0.1270 0.0089 0.5714 8.0 5bp4:I
25 7c9m:C 260 42 0.2381 0.0577 0.3571 8.0 7c7m:A, 7c9m:A, 7c9m:B, 7c9m:D
26 4v4s:AY 365 34 0.1429 0.0247 0.2647 8.1 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
27 5bp4:A 1102 14 0.1270 0.0073 0.5714 8.2 5bp2:A, 5bp4:B, 5bp4:C, 5bp4:D, 5bp4:E, 5bp4:F, 5bp4:G, 5bp4:H, 5bp4:J, 5bp4:K, 5bp4:M, 5bp4:N, 5bp4:P
28 5mdy:7 324 34 0.1429 0.0278 0.2647 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417