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BioLiP
>protein
AAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDA
VITWAILLWSHFG

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bpd:A 118 93 1.0000 0.7881 1.0000 4.15e-59 4bpd:C, 4bpd:D, 4brb:A, 4brb:B, 4brb:C, 4brb:D, 4brr:B, 4brr:D, 4ck0:C, 4ck0:B, 4d2e:A, 4d2e:B, 4d2e:C, 4d2e:D, 4d2e:E, 5d56:A, 5d56:B, 5d56:D, 5d56:C, 5d57:A, 5d57:B, 5d57:D, 5d57:C, 5dwk:A, 5dwk:B, 5dwk:C, 5dwk:D, 4uxx:C, 4uxx:B, 4uxz:A, 4uxz:B, 4uxz:D, 4uyo:A, 4uyo:B, 4uyo:D, 4uyo:C, 4uyo:F, 3ze3:A, 3ze3:B, 3ze3:C, 3ze3:D
2 4by9:F 366 32 0.1828 0.0464 0.5312 0.18 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
3 6fb3:A 1836 36 0.1398 0.0071 0.3611 4.4 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
4 4cj8:H 247 20 0.0860 0.0324 0.4000 5.2 4ayj:B, 4ayj:A, 4ayj:C, 4ayj:D, 4cj8:A, 4cj8:B, 4cj8:C, 4cj8:D, 4cj8:E, 4cj8:F, 4cj8:G, 4cj8:I, 4cj8:J, 4cj8:K, 4cj8:L, 4cj8:M, 4cj8:N, 4cj8:O, 4cj8:P, 4cjc:A, 4cjc:B, 4cjc:C, 4cjc:D
5 4ayl:A 210 20 0.0860 0.0381 0.4000 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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