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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AAEDALYEQQVRDVEAWWATPRYAGITRPYTAADVVSARGSQQQSYPSSTMARKLWNLIQERKAEGKPIHTLGAIDPIQM
TQQAAHQEVLYVSGWACSSVLTSTNEVSPDFGDYPYNTVPNQVQRLAKAQSMHDRKHWDARRKMSAQERSSTPYTDYLRP
IIADGDTGHGGLTAVTKLAKLFAEAGAAAVHFEDQMHGGKKCGHLAGKVLVSTGEHINRLTAARMQWDIMGTENLVIART
DSESGRLISNNIDARDHEFILGVTDPSAAPLAGTLQNMEARGASASEIDAYEAAFTRDHPLVTFDEAAVSHMKKHNVDPA
EYEAGVAKDRDMSIWDRRALAKDILGADKPDVYWDWDVPRTREGYYHFRSGMRAATKRALAFAPYADLLWVETGDPSVSV
CRQLGRAVKEAYPEKALVYNLSPSFNWMGHGFTEQTLKSFIWDIAKEGFVLQLVSLAGVHTNATATCELARAFKDEGMLA
YVNLVQRKEKEIGCDVLTHQKWSGAAYMDRIVGAIQ

The query sequence (length=516) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8z1r:B 516 516 1.0000 1.0000 1.0000 0.0 8z1r:A
2 7ebe:A 544 520 0.4399 0.4173 0.4365 1.86e-155 7ebe:B, 7ebe:C, 7ebe:D
3 5e9g:B 525 512 0.4457 0.4381 0.4492 3.52e-151 5e9f:A, 5e9g:A
4 5e9h:A 518 514 0.4341 0.4324 0.4358 2.85e-148
5 5e9g:D 486 509 0.4399 0.4671 0.4460 1.20e-144
6 5e9f:B 501 509 0.4419 0.4551 0.4479 1.26e-140 5e9f:C, 5e9g:C
7 5e9f:D 453 509 0.3934 0.4481 0.3988 1.87e-116
8 6edw:C 724 570 0.3663 0.2610 0.3316 8.30e-87 6ee1:A, 6ee1:C
9 6edw:B 746 571 0.3682 0.2547 0.3327 2.58e-86 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
10 6edz:C 723 560 0.3585 0.2559 0.3304 6.96e-81
11 1igw:C 416 259 0.2093 0.2596 0.4170 4.81e-55 1igw:B, 1igw:D
12 1igw:C 416 161 0.1182 0.1466 0.3789 2.80e-29 1igw:B, 1igw:D
13 1igw:A 396 259 0.2054 0.2677 0.4093 5.93e-51
14 1igw:A 396 161 0.1066 0.1389 0.3416 2.76e-21
15 6lrt:A 423 256 0.1880 0.2293 0.3789 6.34e-48 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
16 6lrt:A 423 178 0.1260 0.1537 0.3652 1.88e-29 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
17 7cmy:C 417 257 0.1880 0.2326 0.3774 1.90e-44
18 7cmy:C 417 158 0.1221 0.1511 0.3987 1.75e-29
19 7rbx:C 425 241 0.1744 0.2118 0.3734 4.78e-44 7rbx:A, 7rbx:B, 7rbx:D
20 7rbx:C 425 180 0.1298 0.1576 0.3722 1.65e-30 7rbx:A, 7rbx:B, 7rbx:D
21 6c4a:A 428 249 0.1764 0.2126 0.3655 3.04e-42 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
22 6c4a:A 428 158 0.1260 0.1519 0.4114 7.37e-33 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
23 3fa3:B 302 149 0.1182 0.2020 0.4094 8.19e-17 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
24 6g1o:A 486 438 0.1996 0.2119 0.2352 1.32e-14
25 3m0j:A 297 83 0.0659 0.1145 0.4096 2.44e-11 3lye:A, 3m0k:A
26 4iqd:A 290 83 0.0659 0.1172 0.4096 9.99e-10 4iqd:B
27 1mum:A 289 180 0.0950 0.1696 0.2722 1.20e-07 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
28 1zlp:B 285 78 0.0581 0.1053 0.3846 0.023 1zlp:A
29 5unc:A 289 85 0.0562 0.1003 0.3412 0.071 5unc:B, 5unc:C, 5unc:D
30 6t4v:C 277 85 0.0562 0.1047 0.3412 0.085 6t4v:A, 6t4v:B, 6t4v:D, 6t5m:C, 6t5m:A, 6t5m:D, 6t5m:B
31 1m1b:A 291 37 0.0233 0.0412 0.3243 1.0 1m1b:B, 1pym:A, 1pym:B
32 2dua:A 283 36 0.0291 0.0530 0.4167 3.5 2hjp:A
33 8otq:A 1051 59 0.0329 0.0162 0.2881 3.9 8otq:B, 8otw:B, 8xq8:A
34 3b8i:A 284 88 0.0523 0.0951 0.3068 4.3 3b8i:B, 3b8i:C, 3b8i:D, 3b8i:E, 3b8i:F
35 8xq7:A 1041 59 0.0329 0.0163 0.2881 4.4 8xq7:B
36 8pdv:A 1027 59 0.0329 0.0166 0.2881 4.4 8pd8:A, 8pd8:B, 8pd9:A, 8pdu:A, 8pdu:B
37 7quj:A 259 58 0.0426 0.0849 0.3793 7.0 7quj:B, 7quj:C, 7quj:D
38 5zk4:D 73 40 0.0271 0.1918 0.3500 7.3
39 8ewu:B 354 58 0.0349 0.0508 0.3103 8.8 8ewu:A
40 6fpx:A 177 45 0.0271 0.0791 0.3111 9.7 5dno:A, 5eim:A, 5eim:B, 6fpq:A, 6fpx:C, 6fpx:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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