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BioLiP
>protein
AAAPGKNFDLSHWKLQLPDANTTEISSANLGLGYTSQYFYTDTDGAMTFWAPTTGGTTANSSYPRSELREMLDPSNSKVN
WGWQGTHTMKLSGKTVQLPSSGKIIVAQIHGIMDDGTNAPPLVKAVFQDGQLDMQVKQNSDGTGSDVHNYFTGIKLGDLY
NMEIRVTDGVAYVTMNGDTRSVDFVGKDAGWKNLKYYFKAGNFVQDNTSTGGSAIAKLYSLSVSHS

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zaa:A 232 226 0.9956 0.9698 0.9956 2.93e-168 2cws:A, 2zab:A, 2zac:A
2 5xnr:A 385 235 0.3009 0.1766 0.2894 3.30e-14 7d29:A, 7d2a:A
3 7w12:A 490 77 0.1327 0.0612 0.3896 1.74e-08
4 7ncz:A 227 232 0.2655 0.2643 0.2586 1.28e-05 7nm6:A, 7npp:A, 7ny3:A, 7o6h:A, 7oof:A, 7ory:A, 7p25:A, 7p90:A, 7pbf:A
5 8pcx:A 232 228 0.2743 0.2672 0.2719 0.001 8bjo:A, 8bxz:A, 8p6o:A, 8pc3:A, 8pc8:A, 8pdt:A, 8ped:A, 8qli:A, 8r43:A, 8rbn:A
6 2q1w:A 300 61 0.0796 0.0600 0.2951 1.6 2q1w:B, 2q1w:C
7 4yo7:A 287 89 0.0973 0.0767 0.2472 3.3
8 3w15:A 336 56 0.0575 0.0387 0.2321 3.8
9 6oh9:A 452 22 0.0487 0.0243 0.5000 5.0 6oha:A
10 6ee7:A 91 54 0.0531 0.1319 0.2222 6.7 1m1p:A, 1m1p:B, 1m1p:C, 1m1p:D, 1m1p:E, 1m1p:F, 1m1q:A, 1m1r:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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