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BioLiP
>protein
AAAAAAAAAAAAAAAAAAAAAIKTKKRKTLKNLRKDSVKRGKFRVQLLSTTQDSKTLPPKKESSIIRSKDRWLNRKALNK
G

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5wlc:ND 81 81 1.0000 1.0000 1.0000 1.10e-48 7ajt:UP, 7d5s:5B, 6ke6:5B, 6lqp:5B, 6lqu:5B, 7suk:ND, 6zqa:UP, 6zqb:UP, 6zqc:UP
2 2ozg:A 388 27 0.1481 0.0309 0.4444 1.1
3 4hd5:A 316 20 0.0988 0.0253 0.4000 8.6 4v33:A, 4v33:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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