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BioLiP
>dna
ttcttactatttcttttttaactttcggaaatcaaatacactaatattttaa

The query sequence (length=52) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gys:G 52 52 1.0000 1.0000 1.0000 3.31e-23
2 6gys:F 52 52 1.0000 1.0000 1.0000 3.31e-23
3 8ow1:E 153 48 0.9231 0.3137 1.0000 5.53e-21
4 8ow1:D 153 48 0.9231 0.3137 1.0000 5.53e-21
5 7k7g:J 123 48 0.9231 0.3902 1.0000 5.53e-21
6 7k7g:I 123 48 0.9231 0.3902 1.0000 5.53e-21
7 7k78:J 116 45 0.8654 0.3879 1.0000 2.57e-19
8 7k78:I 116 45 0.8654 0.3879 1.0000 2.57e-19
9 8ow0:D 121 33 0.6346 0.2727 1.0000 1.21e-12
10 8ow0:E 120 32 0.6154 0.2667 1.0000 4.34e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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