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BioLiP
>dna
tcgccccccttcggtgctttgcaccgaaggggggc

The query sequence (length=35) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dbm:F 38 35 1.0000 0.9211 1.0000 5.60e-14 6ik9:F, 6ika:F, 6kdm:F, 6kdn:F, 8x1z:F, 8x20:F, 8x21:F, 8x22:F, 5xn0:F, 5xn1:F, 5xn2:F
2 7dbm:E 35 35 1.0000 1.0000 1.0000 5.60e-14 6ik9:E, 6ika:E, 6kdm:E, 6kdn:E, 8x1z:E, 8x20:E, 8x21:E, 8x22:E, 5xn0:E, 5xn1:E, 5xn2:E
3 7z24:E 36 31 0.8857 0.8611 1.0000 9.37e-12 7z2d:E, 7z2g:E
4 6vug:E 34 31 0.8857 0.9118 1.0000 9.37e-12
5 7ozw:F 34 31 0.8857 0.9118 1.0000 9.37e-12 7p15:F
6 6o9e:F 35 31 0.8857 0.8857 1.0000 9.37e-12 6o9e:E
7 5i3u:E 36 31 0.8857 0.8611 1.0000 9.37e-12 5i3u:F
8 5hlf:E 35 31 0.8857 0.8857 1.0000 9.37e-12 5hlf:F, 5hp1:F, 5hp1:E, 5hro:E, 5hro:F, 5i42:E, 5i42:F, 7lri:E, 7lri:F, 7lsk:F, 7lsk:E
9 7dbn:F 38 31 0.8857 0.8158 1.0000 9.37e-12 6kdj:F, 6kdk:F, 6kdo:F
10 7dbn:E 35 31 0.8857 0.8857 1.0000 9.37e-12 6kdj:E, 6kdk:E, 6kdo:E, 7lrm:F, 7lrm:E, 7lrx:F, 7lrx:E, 7lry:F, 7lry:E
11 5d3g:F 36 31 0.8857 0.8611 1.0000 9.37e-12 5d3g:E, 7z29:E, 7z2e:E, 7z2h:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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