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BioLiP
>dna
tcctcagtcgcgatcgaacactcgagccgagcagacgtgcctacg

The query sequence (length=45) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iy8:Y 83 45 1.0000 0.5422 1.0000 2.09e-19 5iy9:Y
2 5fur:F 80 45 1.0000 0.5625 1.0000 2.09e-19 6mzm:U
3 5fur:E 80 45 1.0000 0.5625 1.0000 2.09e-19 6mzm:V
4 7egj:Y 74 45 1.0000 0.6081 1.0000 2.09e-19
5 7egj:X 74 45 1.0000 0.6081 1.0000 2.09e-19
6 7egh:Y 45 45 1.0000 1.0000 1.0000 2.09e-19
7 7egh:X 45 45 1.0000 1.0000 1.0000 2.09e-19
8 7egd:Y 72 45 1.0000 0.6250 1.0000 2.09e-19
9 7egd:X 72 45 1.0000 0.6250 1.0000 2.09e-19
10 5iyc:Y 80 44 0.9778 0.5500 1.0000 7.51e-19 5iyd:Y
11 5iy7:Y 77 41 0.9111 0.5325 1.0000 3.49e-17
12 5iyb:Y 75 39 0.8667 0.5200 1.0000 4.52e-16
13 7eg9:Y 71 37 0.8222 0.5211 1.0000 5.84e-15
14 7eg9:X 71 37 0.8222 0.5211 1.0000 5.84e-15
15 7eg7:Y 71 36 0.8000 0.5070 1.0000 2.10e-14
16 7eg7:X 71 36 0.8000 0.5070 1.0000 2.10e-14
17 5iy7:X 77 34 0.7556 0.4416 1.0000 2.72e-13
18 7egb:Y 69 34 0.7556 0.4928 1.0000 2.72e-13 7ena:Y, 7enc:Y
19 7egb:X 69 34 0.7556 0.4928 1.0000 2.72e-13 7ena:X, 7enc:X
20 5iyb:X 75 32 0.7111 0.4267 1.0000 3.52e-12
21 5iy8:X 83 32 0.7111 0.3855 1.0000 3.52e-12 5iy9:X
22 5iyc:X 80 31 0.6889 0.3875 1.0000 1.27e-11 5iyd:X
23 5iy6:Y 65 29 0.6444 0.4462 1.0000 1.64e-10 6o9l:Y
24 5iy6:X 65 29 0.6444 0.4462 1.0000 1.64e-10 6o9l:X
25 7lbm:V 64 28 0.6222 0.4375 1.0000 5.89e-10
26 7lbm:U 64 28 0.6222 0.4375 1.0000 5.89e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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