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BioLiP
>dna
tacacccaagacaccaggcacgagacagaaaaaaacaaaa

The query sequence (length=40) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jh2:0 40 40 1.0000 1.0000 1.0000 1.15e-16
2 7xti:T 85 38 0.9500 0.4471 1.0000 1.49e-15
3 7xti:N 74 38 0.9500 0.5135 1.0000 1.49e-15
4 7xtd:T 123 38 0.9500 0.3089 1.0000 1.49e-15
5 7xtd:N 112 38 0.9500 0.3393 1.0000 1.49e-15
6 8jnd:J 153 38 0.9500 0.2484 1.0000 1.49e-15 8jne:J, 8xbt:J, 8xbu:J
7 8jnd:I 156 38 0.9500 0.2436 1.0000 1.49e-15 8jne:I, 8xbt:I, 8xbu:I
8 8jh3:T 159 38 0.9500 0.2390 1.0000 1.49e-15
9 6j4w:N 165 38 0.9500 0.2303 1.0000 1.49e-15
10 6j4w:T 171 38 0.9500 0.2222 1.0000 1.49e-15
11 6a5p:N 159 38 0.9500 0.2390 1.0000 1.49e-15
12 6a5p:T 168 38 0.9500 0.2262 1.0000 1.49e-15
13 6a5o:N 169 38 0.9500 0.2249 1.0000 1.49e-15
14 6a5o:T 178 38 0.9500 0.2135 1.0000 1.49e-15 8jh4:T
15 6j51:1 36 36 0.9000 1.0000 1.0000 1.93e-14
16 6j51:0 36 36 0.9000 1.0000 1.0000 1.93e-14
17 6j50:1 41 36 0.9000 0.8780 1.0000 1.93e-14
18 6j50:0 41 36 0.9000 0.8780 1.0000 1.93e-14
19 6a5u:1 40 36 0.9000 0.9000 1.0000 1.93e-14
20 6a5u:0 40 36 0.9000 0.9000 1.0000 1.93e-14
21 6a5l:1 42 36 0.9000 0.8571 1.0000 1.93e-14 6j4z:1
22 6a5l:0 42 36 0.9000 0.8571 1.0000 1.93e-14 6j4z:0
23 7wbv:T 159 38 0.9250 0.2327 0.9737 6.93e-14
24 8he5:T 154 38 0.9250 0.2403 0.9737 6.93e-14 7wbw:T
25 7wbv:N 154 33 0.8250 0.2143 1.0000 8.97e-13
26 6a5r:T 136 33 0.8250 0.2426 1.0000 8.97e-13
27 8he5:N 142 32 0.8000 0.2254 1.0000 3.23e-12
28 7xse:T 134 31 0.7750 0.2313 1.0000 1.16e-11
29 7xn7:T 53 31 0.7750 0.5849 1.0000 1.16e-11
30 7wbw:N 149 33 0.8000 0.2148 0.9697 4.17e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417