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BioLiP
>dna
gtttttttctgtctcgtgcctggtgtcttgggtgta

The query sequence (length=36) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xti:T 85 36 1.0000 0.4235 1.0000 1.63e-14
2 7xti:N 74 36 1.0000 0.4865 1.0000 1.63e-14
3 7xtd:T 123 36 1.0000 0.2927 1.0000 1.63e-14
4 7xtd:N 112 36 1.0000 0.3214 1.0000 1.63e-14
5 8jnd:J 153 36 1.0000 0.2353 1.0000 1.63e-14 8jne:J, 8xbt:J, 8xbu:J
6 8jnd:I 156 36 1.0000 0.2308 1.0000 1.63e-14 8jne:I, 8xbt:I, 8xbu:I
7 8jh3:T 159 36 1.0000 0.2264 1.0000 1.63e-14
8 8jh2:0 40 36 1.0000 0.9000 1.0000 1.63e-14
9 6j51:1 36 36 1.0000 1.0000 1.0000 1.63e-14
10 6j51:0 36 36 1.0000 1.0000 1.0000 1.63e-14
11 6j50:1 41 36 1.0000 0.8780 1.0000 1.63e-14
12 6j50:0 41 36 1.0000 0.8780 1.0000 1.63e-14
13 6j4w:N 165 36 1.0000 0.2182 1.0000 1.63e-14
14 6j4w:T 171 36 1.0000 0.2105 1.0000 1.63e-14
15 6a5u:1 40 36 1.0000 0.9000 1.0000 1.63e-14
16 6a5u:0 40 36 1.0000 0.9000 1.0000 1.63e-14
17 6a5p:N 159 36 1.0000 0.2264 1.0000 1.63e-14
18 6a5p:T 168 36 1.0000 0.2143 1.0000 1.63e-14
19 6a5o:N 169 36 1.0000 0.2130 1.0000 1.63e-14
20 6a5o:T 178 36 1.0000 0.2022 1.0000 1.63e-14 8jh4:T
21 6a5l:1 42 36 1.0000 0.8571 1.0000 1.63e-14 6j4z:1
22 6a5l:0 42 36 1.0000 0.8571 1.0000 1.63e-14 6j4z:0
23 7wbv:T 159 33 0.9167 0.2075 1.0000 7.59e-13
24 7wbv:N 154 33 0.9167 0.2143 1.0000 7.59e-13
25 8he5:T 154 36 0.9722 0.2273 0.9722 7.59e-13 7wbw:T
26 6a5r:T 136 33 0.9167 0.2426 1.0000 7.59e-13
27 8he5:N 142 32 0.8889 0.2254 1.0000 2.73e-12
28 7xse:T 134 31 0.8611 0.2313 1.0000 9.82e-12
29 7xn7:T 53 31 0.8611 0.5849 1.0000 9.82e-12
30 7wbw:N 149 33 0.8889 0.2148 0.9697 3.53e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417