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BioLiP
>dna
gggtattcgccgcgtacctctcctccgcaagtatcctattccttgcagcggt

The query sequence (length=52) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6x43:P 52 52 1.0000 1.0000 1.0000 3.31e-23
2 6x26:P 55 55 1.0000 0.9455 0.9455 9.26e-19 6x2f:P, 6x2n:P, 6x4w:P, 6x4y:P, 6x50:P
3 6x50:Q 49 52 0.8654 0.9184 0.8654 2.02e-10
4 6x4w:Q 48 28 0.5385 0.5833 1.0000 7.26e-10 6x4y:Q
5 6x26:Q 49 28 0.5385 0.5714 1.0000 7.26e-10 6x2f:Q, 6x2n:Q, 6x43:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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