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BioLiP
>dna
gctgccgaagcgagcacggtgctttccacaagatatataaagccaagaaatcgaaatactttcaagttacggtaagcata
t

The query sequence (length=81) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8iuh:Y 81 81 1.0000 1.0000 1.0000 4.46e-39
2 8iuh:X 81 81 0.9753 0.9753 0.9753 9.66e-36
3 8iue:Y 70 61 0.7531 0.8714 1.0000 5.86e-28
4 8iue:X 74 60 0.7407 0.8108 1.0000 2.11e-27
5 8ity:Y 82 63 0.7654 0.7561 0.9841 2.11e-27
6 8ity:X 82 60 0.7407 0.7317 1.0000 2.11e-27

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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