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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>dna
gagcgttcagcgttcgtttatctccccctggtataatgggagctgtcacggatgca

The query sequence (length=56) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8k60:G 56 56 1.0000 1.0000 1.0000 2.19e-25
2 8k60:H 57 32 0.5714 0.5614 1.0000 4.81e-12
3 8hvr:P 61 31 0.5536 0.5082 1.0000 1.73e-11 8jke:P
4 8hvr:O 61 31 0.5536 0.5082 1.0000 1.73e-11 8jke:O
5 8gzg:1 50 28 0.5000 0.5600 1.0000 8.04e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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