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BioLiP
>dna
gaagggcgcctataaaagggggtgggggcgcgttcgtccgcacggccgatcgaacactcgagccgag

The query sequence (length=67) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gxq:Y 67 67 1.0000 1.0000 1.0000 2.13e-31 8gxs:Y
2 8gxq:X 67 67 1.0000 1.0000 1.0000 2.13e-31 8gxs:X
3 5iyc:Y 80 68 0.9552 0.8000 0.9412 9.99e-25 5iyd:Y
4 5iyb:Y 75 68 0.9552 0.8533 0.9412 9.99e-25
5 5iy7:Y 77 68 0.9552 0.8312 0.9412 9.99e-25
6 7egb:Y 69 67 0.9403 0.9130 0.9403 3.59e-24 7ena:Y, 7enc:Y
7 7egb:X 69 67 0.9403 0.9130 0.9403 3.59e-24 7ena:X, 7enc:X
8 7eg7:Y 71 67 0.9403 0.8873 0.9403 3.59e-24
9 7eg7:X 71 67 0.9403 0.8873 0.9403 3.59e-24
10 5iy6:Y 65 66 0.9254 0.9538 0.9394 1.29e-23 6o9l:Y
11 5iy6:X 65 66 0.9254 0.9538 0.9394 1.29e-23 6o9l:X
12 5fur:F 80 66 0.9254 0.7750 0.9394 1.29e-23 6mzm:U
13 5fur:E 80 66 0.9254 0.7750 0.9394 1.29e-23 6mzm:V
14 7eg9:Y 71 66 0.9254 0.8732 0.9394 1.29e-23
15 7eg9:X 71 66 0.9254 0.8732 0.9394 1.29e-23
16 7lbm:V 64 65 0.9104 0.9531 0.9385 4.65e-23
17 7lbm:U 64 65 0.9104 0.9531 0.9385 4.65e-23
18 5iya:Y 59 60 0.8358 0.9492 0.9333 2.80e-20
19 5iya:X 59 60 0.8358 0.9492 0.9333 2.80e-20
20 7egj:Y 74 60 0.8358 0.7568 0.9333 2.80e-20
21 7egj:X 74 60 0.8358 0.7568 0.9333 2.80e-20
22 7egd:Y 72 59 0.8209 0.7639 0.9322 1.01e-19
23 7egd:X 72 59 0.8209 0.7639 0.9322 1.01e-19
24 7nvt:T 50 43 0.5970 0.8000 0.9302 4.71e-13
25 7nvt:N 50 43 0.5970 0.8000 0.9302 4.71e-13
26 7nvs:T 49 43 0.5970 0.8163 0.9302 4.71e-13
27 7nvs:N 49 43 0.5970 0.8163 0.9302 4.71e-13
28 7nvr:T 64 43 0.5970 0.6250 0.9302 4.71e-13 7nvy:T, 7nvz:T
29 7nvr:N 64 43 0.5970 0.6250 0.9302 4.71e-13 7nvy:N, 7nvz:N
30 5iyb:X 75 69 0.8657 0.7733 0.8406 4.71e-13
31 5iy7:X 77 69 0.8657 0.7532 0.8406 4.71e-13
32 8byq:T 198 43 0.5970 0.2020 0.9302 4.71e-13 8bz1:T
33 8byq:N 198 43 0.5970 0.2020 0.9302 4.71e-13 8bz1:N
34 8bvw:T 206 43 0.5970 0.1942 0.9302 4.71e-13
35 8bvw:N 206 43 0.5970 0.1942 0.9302 4.71e-13
36 5iyc:X 80 30 0.4478 0.3750 1.0000 7.89e-11 5iyd:X
37 5iy8:X 83 30 0.4478 0.3614 1.0000 7.89e-11 5iy9:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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