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BioLiP
>dna
gaagggcgcctataaaagggggtgggggcgcgaattttttttttcgcgatcgaacactcgagccgagcagacgtgcc

The query sequence (length=77) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iy7:X 77 77 1.0000 1.0000 1.0000 7.02e-37
2 5iyb:X 75 75 0.9740 1.0000 1.0000 9.08e-36
3 5iyc:Y 80 77 0.8831 0.8500 0.8831 7.17e-22 5iyd:Y
4 5iyc:X 80 77 0.8831 0.8500 0.8831 7.17e-22 5iyd:X
5 5iy8:X 83 77 0.8831 0.8193 0.8831 7.17e-22 5iy9:X
6 5iy7:Y 77 77 0.8831 0.8831 0.8831 7.17e-22
7 5iyb:Y 75 75 0.8571 0.8800 0.8800 9.27e-21
8 5fur:F 80 75 0.8571 0.8250 0.8800 9.27e-21 6mzm:U
9 5fur:E 80 75 0.8571 0.8250 0.8800 9.27e-21 6mzm:V
10 5iy8:Y 83 77 0.8701 0.8072 0.8701 3.33e-20 5iy9:Y
11 7eg9:Y 71 71 0.8052 0.8732 0.8732 1.55e-18
12 7eg9:X 71 73 0.8312 0.9014 0.8767 1.55e-18
13 7eg7:Y 71 73 0.8312 0.9014 0.8767 1.55e-18
14 7eg7:X 71 73 0.8312 0.9014 0.8767 1.55e-18
15 7egj:Y 74 69 0.7792 0.8108 0.8696 2.01e-17
16 7egj:X 74 69 0.7792 0.8108 0.8696 2.01e-17
17 7egb:Y 69 71 0.8052 0.8986 0.8732 2.01e-17 7ena:Y, 7enc:Y
18 7egb:X 69 71 0.8052 0.8986 0.8732 2.01e-17 7ena:X, 7enc:X
19 7egd:Y 72 68 0.7662 0.8194 0.8676 7.22e-17
20 7egd:X 72 68 0.7662 0.8194 0.8676 7.22e-17
21 5iy6:Y 65 67 0.7532 0.8923 0.8657 3.36e-15 6o9l:Y
22 5iy6:X 65 67 0.7532 0.8923 0.8657 3.36e-15 6o9l:X
23 7lbm:V 64 66 0.7403 0.8906 0.8636 1.21e-14
24 7lbm:U 64 66 0.7403 0.8906 0.8636 1.21e-14
25 8gxq:Y 67 69 0.7532 0.8657 0.8406 5.62e-13 8gxs:Y
26 8gxq:X 67 69 0.7532 0.8657 0.8406 5.62e-13 8gxs:X
27 7egh:Y 45 34 0.4416 0.7556 1.0000 5.62e-13
28 7egh:X 45 34 0.4416 0.7556 1.0000 5.62e-13
29 5iya:Y 59 61 0.6753 0.8814 0.8525 7.27e-12
30 5iya:X 59 32 0.4156 0.5424 1.0000 7.27e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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