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BioLiP
>dna
gaagggcgcctataaaagggggtgggggcgcgaattttttttttcgcgatcgaacactcgagccgagcagacgtg

The query sequence (length=75) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iyb:X 75 75 1.0000 1.0000 1.0000 8.78e-36
2 5iy7:X 77 75 1.0000 0.9740 1.0000 8.78e-36
3 5iyc:Y 80 75 0.8800 0.8250 0.8800 8.97e-21 5iyd:Y
4 5iyc:X 80 75 0.8800 0.8250 0.8800 8.97e-21 5iyd:X
5 5iyb:Y 75 75 0.8800 0.8800 0.8800 8.97e-21
6 5iy8:X 83 75 0.8800 0.7952 0.8800 8.97e-21 5iy9:X
7 5iy7:Y 77 75 0.8800 0.8571 0.8800 8.97e-21
8 5fur:F 80 73 0.8533 0.8000 0.8767 1.16e-19 6mzm:U
9 5fur:E 80 73 0.8533 0.8000 0.8767 1.16e-19 6mzm:V
10 5iy8:Y 83 75 0.8667 0.7831 0.8667 4.17e-19 5iy9:Y
11 7eg9:Y 71 71 0.8267 0.8732 0.8732 1.50e-18
12 7eg9:X 71 73 0.8533 0.9014 0.8767 1.50e-18
13 7eg7:Y 71 73 0.8533 0.9014 0.8767 1.50e-18
14 7eg7:X 71 73 0.8533 0.9014 0.8767 1.50e-18
15 7egb:Y 69 71 0.8267 0.8986 0.8732 1.94e-17 7ena:Y, 7enc:Y
16 7egb:X 69 71 0.8267 0.8986 0.8732 1.94e-17 7ena:X, 7enc:X
17 7egj:Y 74 67 0.7733 0.7838 0.8657 2.51e-16
18 7egj:X 74 67 0.7733 0.7838 0.8657 2.51e-16
19 7egd:Y 72 66 0.7600 0.7917 0.8636 9.04e-16
20 7egd:X 72 66 0.7600 0.7917 0.8636 9.04e-16
21 5iy6:Y 65 67 0.7733 0.8923 0.8657 3.25e-15 6o9l:Y
22 5iy6:X 65 67 0.7733 0.8923 0.8657 3.25e-15 6o9l:X
23 7lbm:V 64 66 0.7600 0.8906 0.8636 1.17e-14
24 7lbm:U 64 66 0.7600 0.8906 0.8636 1.17e-14
25 8gxq:Y 67 69 0.7733 0.8657 0.8406 5.44e-13 8gxs:Y
26 8gxq:X 67 69 0.7733 0.8657 0.8406 5.44e-13 8gxs:X
27 5iya:Y 59 61 0.6933 0.8814 0.8525 7.04e-12
28 5iya:X 59 32 0.4267 0.5424 1.0000 7.04e-12
29 7egh:Y 45 32 0.4267 0.7111 1.0000 7.04e-12
30 7egh:X 45 32 0.4267 0.7111 1.0000 7.04e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417